Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 10900 | 0.66 | 0.758616 |
|
Target: 5'- -uUCCgAUUCAGGACCAgcccgacggcGAGGACCGc -3' miRNA: 3'- ucGGGaUGAGUCUUGGUa---------CUCCUGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 27597 | 0.66 | 0.758616 |
|
Target: 5'- cGCCCcggcauCUCGGAucACCGcUGGGuGACCGa -3' miRNA: 3'- uCGGGau----GAGUCU--UGGU-ACUC-CUGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 38614 | 0.66 | 0.737586 |
|
Target: 5'- aGGCCaugucgaaUGCUCuGGGCCGUGAuuucgguucGGACUAu -3' miRNA: 3'- -UCGGg-------AUGAGuCUUGGUACU---------CCUGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 12027 | 0.67 | 0.716122 |
|
Target: 5'- uGGCUUUGUUCGGGACCAUGAuGuCCAg -3' miRNA: 3'- -UCGGGAUGAGUCUUGGUACUcCuGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 36164 | 0.67 | 0.672266 |
|
Target: 5'- uGCCCg---CAGGGCgGcGAGGACCGc -3' miRNA: 3'- uCGGGaugaGUCUUGgUaCUCCUGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 21469 | 0.68 | 0.650059 |
|
Target: 5'- cGGCgUUGCUC---GCCAgaUGAGGGCCAc -3' miRNA: 3'- -UCGgGAUGAGucuUGGU--ACUCCUGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 35527 | 0.69 | 0.572336 |
|
Target: 5'- aAGCCgaGUUCAGGaaGCCG-GAGGACCAu -3' miRNA: 3'- -UCGGgaUGAGUCU--UGGUaCUCCUGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 12142 | 0.71 | 0.466065 |
|
Target: 5'- cGGUCCUccaUCAGGcgACCuUGAGGACCGc -3' miRNA: 3'- -UCGGGAug-AGUCU--UGGuACUCCUGGU- -5' |
|||||||
| 18174 | 5' | -54.3 | NC_004680.1 | + | 12087 | 1.08 | 0.001341 |
|
Target: 5'- cAGCCCUACUCAGAACCAUGAGGACCAc -3' miRNA: 3'- -UCGGGAUGAGUCUUGGUACUCCUGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home