miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18257 3' -53.7 NC_004681.1 + 7143 1.11 0.002015
Target:  5'- gCCGCGGUCGUUCAUGAACGCGACGGAg -3'
miRNA:   3'- -GGCGCCAGCAAGUACUUGCGCUGCCU- -5'
18257 3' -53.7 NC_004681.1 + 46728 0.75 0.445882
Target:  5'- uCCGCGGcaUCGacgcugUCAUGAACGUgGugGGAc -3'
miRNA:   3'- -GGCGCC--AGCa-----AGUACUUGCG-CugCCU- -5'
18257 3' -53.7 NC_004681.1 + 6371 0.74 0.48466
Target:  5'- cUCGCGGcccUCGUUCggGGugGCGAcacCGGAg -3'
miRNA:   3'- -GGCGCC---AGCAAGuaCUugCGCU---GCCU- -5'
18257 3' -53.7 NC_004681.1 + 12397 0.72 0.566503
Target:  5'- aCCGCGGcgacgcUCGUcgGUGAGCcgGUGACGGAc -3'
miRNA:   3'- -GGCGCC------AGCAagUACUUG--CGCUGCCU- -5'
18257 3' -53.7 NC_004681.1 + 45275 0.72 0.587592
Target:  5'- gCGCGGUCG---AUGAaagacugcaccuGCGCGACGGu -3'
miRNA:   3'- gGCGCCAGCaagUACU------------UGCGCUGCCu -5'
18257 3' -53.7 NC_004681.1 + 61242 0.72 0.587592
Target:  5'- gUCGCGGcggCGUUCGuUGGACaCGACGGu -3'
miRNA:   3'- -GGCGCCa--GCAAGU-ACUUGcGCUGCCu -5'
18257 3' -53.7 NC_004681.1 + 24824 0.72 0.608821
Target:  5'- aCGCGGUCGaccUCAUcGGCGuCGGCGGc -3'
miRNA:   3'- gGCGCCAGCa--AGUAcUUGC-GCUGCCu -5'
18257 3' -53.7 NC_004681.1 + 15703 0.7 0.683251
Target:  5'- uUCGCGGUCGUcuugUCGUcgccGAACaGUGACGaGAa -3'
miRNA:   3'- -GGCGCCAGCA----AGUA----CUUG-CGCUGC-CU- -5'
18257 3' -53.7 NC_004681.1 + 44682 0.7 0.735225
Target:  5'- gUGCGG-CGgcCGcGAGCGCGGCGGc -3'
miRNA:   3'- gGCGCCaGCaaGUaCUUGCGCUGCCu -5'
18257 3' -53.7 NC_004681.1 + 31835 0.69 0.755408
Target:  5'- aUCG-GGUCGgcgccugccacUUCGgacagGAGCGCGAUGGAg -3'
miRNA:   3'- -GGCgCCAGC-----------AAGUa----CUUGCGCUGCCU- -5'
18257 3' -53.7 NC_004681.1 + 34347 0.69 0.764341
Target:  5'- gCCGCGG-CGg-CGUGAggguuguGCGCGcuGCGGAa -3'
miRNA:   3'- -GGCGCCaGCaaGUACU-------UGCGC--UGCCU- -5'
18257 3' -53.7 NC_004681.1 + 62934 0.69 0.78477
Target:  5'- gCUGUGGUCGacuccaucuccUUCggcgGUGGugGCGGCGGc -3'
miRNA:   3'- -GGCGCCAGC-----------AAG----UACUugCGCUGCCu -5'
18257 3' -53.7 NC_004681.1 + 61846 0.68 0.812795
Target:  5'- gCCGCGGUC--UgGUGGcGCGCGAgGGc -3'
miRNA:   3'- -GGCGCCAGcaAgUACU-UGCGCUgCCu -5'
18257 3' -53.7 NC_004681.1 + 6797 0.68 0.830605
Target:  5'- aCCGCGGUgcucucaacccCGUcgAUGGAcCGUGACGGc -3'
miRNA:   3'- -GGCGCCA-----------GCAagUACUU-GCGCUGCCu -5'
18257 3' -53.7 NC_004681.1 + 10617 0.67 0.836657
Target:  5'- uCCGCGGUCGgacuUCGcgcccuugccgaucUGGACaaagGUGACGGu -3'
miRNA:   3'- -GGCGCCAGCa---AGU--------------ACUUG----CGCUGCCu -5'
18257 3' -53.7 NC_004681.1 + 19588 0.67 0.83922
Target:  5'- cCCGCGGUCaacgagcUC-UGGGCGCGcuGCGGc -3'
miRNA:   3'- -GGCGCCAGca-----AGuACUUGCGC--UGCCu -5'
18257 3' -53.7 NC_004681.1 + 51421 0.67 0.83922
Target:  5'- uCCGCGG-CGacgGUGAugACGuCGGCGGAc -3'
miRNA:   3'- -GGCGCCaGCaagUACU--UGC-GCUGCCU- -5'
18257 3' -53.7 NC_004681.1 + 44283 0.67 0.847632
Target:  5'- uCCaGCGGUCGUUgGUGAuUGgGGCGc- -3'
miRNA:   3'- -GG-CGCCAGCAAgUACUuGCgCUGCcu -5'
18257 3' -53.7 NC_004681.1 + 49736 0.67 0.863811
Target:  5'- cCCGCucccGGcacuccuucUCGUUCAccGGACGaCGACGGGa -3'
miRNA:   3'- -GGCG----CC---------AGCAAGUa-CUUGC-GCUGCCU- -5'
18257 3' -53.7 NC_004681.1 + 35585 0.67 0.871564
Target:  5'- -gGUGGUCGgag--GAAgGCGACGGc -3'
miRNA:   3'- ggCGCCAGCaaguaCUUgCGCUGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.