miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18263 3' -54.9 NC_004681.1 + 56362 0.66 0.787305
Target:  5'- cUCGUGgccguUGAGGGuGUCGaAGGUGu -3'
miRNA:   3'- aAGCACauuu-ACUCCCcCGGC-UCCAC- -5'
18263 3' -54.9 NC_004681.1 + 32556 0.67 0.747054
Target:  5'- cUUCGacgcccUGaAGGGGGCCGAGGa- -3'
miRNA:   3'- -AAGCacauuuAC-UCCCCCGGCUCCac -5'
18263 3' -54.9 NC_004681.1 + 9652 0.69 0.596317
Target:  5'- ----cGUucGUGAGGGGGCCG-GGUc -3'
miRNA:   3'- aagcaCAuuUACUCCCCCGGCuCCAc -5'
18263 3' -54.9 NC_004681.1 + 28613 0.71 0.52141
Target:  5'- -cCGUGgaGAUGAccgcGGGGGugcCCGGGGUGa -3'
miRNA:   3'- aaGCACauUUACU----CCCCC---GGCUCCAC- -5'
18263 3' -54.9 NC_004681.1 + 22516 0.71 0.480246
Target:  5'- --gGUGUAGugcgGAGGGuugccguccgcGGCCGGGGUGa -3'
miRNA:   3'- aagCACAUUua--CUCCC-----------CCGGCUCCAC- -5'
18263 3' -54.9 NC_004681.1 + 9773 1.06 0.002123
Target:  5'- uUUCGUGUAAAUGAGGGGGCCGAGGUGa -3'
miRNA:   3'- -AAGCACAUUUACUCCCCCGGCUCCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.