miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18281 5' -56.2 NC_004681.1 + 54377 0.66 0.773466
Target:  5'- gCCACCcaGCUGgguguggaguUCGAggUGGUCGaCGUCa -3'
miRNA:   3'- -GGUGGaaCGAC----------AGCU--ACCAGC-GCGGa -5'
18281 5' -56.2 NC_004681.1 + 24734 0.66 0.763646
Target:  5'- uCCGCggUGUUGUCGcgGGaUGCaGCCa -3'
miRNA:   3'- -GGUGgaACGACAGCuaCCaGCG-CGGa -5'
18281 5' -56.2 NC_004681.1 + 33707 0.66 0.763646
Target:  5'- gCgACCUUgGC-GUUGAUGucGUCGCGCUUg -3'
miRNA:   3'- -GgUGGAA-CGaCAGCUAC--CAGCGCGGA- -5'
18281 5' -56.2 NC_004681.1 + 25319 0.66 0.753699
Target:  5'- gCCGCCgUUGUUGaaGAagcGGUCGcCGCCg -3'
miRNA:   3'- -GGUGG-AACGACagCUa--CCAGC-GCGGa -5'
18281 5' -56.2 NC_004681.1 + 69048 0.66 0.753698
Target:  5'- gCACCU-GCgacacCGAUGGcUGCGCCUu -3'
miRNA:   3'- gGUGGAaCGaca--GCUACCaGCGCGGA- -5'
18281 5' -56.2 NC_004681.1 + 27027 0.66 0.753698
Target:  5'- aCCGCCUacGCgGUCGccuucgaguccGUGGUCgGCGUCg -3'
miRNA:   3'- -GGUGGAa-CGaCAGC-----------UACCAG-CGCGGa -5'
18281 5' -56.2 NC_004681.1 + 19211 0.66 0.743635
Target:  5'- uCCACCcaGCUG-CGAaccUCGCGCCg -3'
miRNA:   3'- -GGUGGaaCGACaGCUaccAGCGCGGa -5'
18281 5' -56.2 NC_004681.1 + 53784 0.67 0.701379
Target:  5'- aCACCcacUGCUucaugggGUCGGUGGUuccggCGCGCUUg -3'
miRNA:   3'- gGUGGa--ACGA-------CAGCUACCA-----GCGCGGA- -5'
18281 5' -56.2 NC_004681.1 + 18472 0.68 0.660184
Target:  5'- gCCGCCUggccUGCcaUGUCGAUGG-CGCcaCCg -3'
miRNA:   3'- -GGUGGA----ACG--ACAGCUACCaGCGc-GGa -5'
18281 5' -56.2 NC_004681.1 + 9099 0.69 0.585662
Target:  5'- uUCACgUUGCUGaCGGUggccgaGGUgGCGCCg -3'
miRNA:   3'- -GGUGgAACGACaGCUA------CCAgCGCGGa -5'
18281 5' -56.2 NC_004681.1 + 39895 0.69 0.585662
Target:  5'- cCCACgagGCgugGgaggCGAUGGUCGCGCg- -3'
miRNA:   3'- -GGUGgaaCGa--Ca---GCUACCAGCGCGga -5'
18281 5' -56.2 NC_004681.1 + 49677 0.69 0.554104
Target:  5'- cCCGCCUgaUGCaGUCGuUGGugccUCGgGCCUg -3'
miRNA:   3'- -GGUGGA--ACGaCAGCuACC----AGCgCGGA- -5'
18281 5' -56.2 NC_004681.1 + 66927 0.71 0.463212
Target:  5'- aCCACCacgagGUUGUCGA-GGUCcacaccgaGCGCCUu -3'
miRNA:   3'- -GGUGGaa---CGACAGCUaCCAG--------CGCGGA- -5'
18281 5' -56.2 NC_004681.1 + 62674 0.72 0.425364
Target:  5'- gCACCUacUGCUGaCGAUGcGUCgucgGCGCCg -3'
miRNA:   3'- gGUGGA--ACGACaGCUAC-CAG----CGCGGa -5'
18281 5' -56.2 NC_004681.1 + 20536 1.1 0.001025
Target:  5'- aCCACCUUGCUGUCGAUGGUCGCGCCUg -3'
miRNA:   3'- -GGUGGAACGACAGCUACCAGCGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.