miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18357 5' -52.2 NC_004681.1 + 52183 0.66 0.912837
Target:  5'- gGUGCGCucgucccacuuggGGUUgcugUUcuccAUCAGCugGGCGUa -3'
miRNA:   3'- -CACGCG-------------CCAAa---AA----UGGUCGugUCGCA- -5'
18357 5' -52.2 NC_004681.1 + 42343 0.66 0.906919
Target:  5'- -cGgGCGGg----ACCAGCAgcuCGGCGg -3'
miRNA:   3'- caCgCGCCaaaaaUGGUCGU---GUCGCa -5'
18357 5' -52.2 NC_004681.1 + 31866 0.66 0.906919
Target:  5'- -cGCGCGGUcuucUUGCCGGuCugGGUa- -3'
miRNA:   3'- caCGCGCCAaa--AAUGGUC-GugUCGca -5'
18357 5' -52.2 NC_004681.1 + 39477 0.66 0.900079
Target:  5'- gGUGCGCuGGcucaagGCCGGUgGCAGCGa -3'
miRNA:   3'- -CACGCG-CCaaaaa-UGGUCG-UGUCGCa -5'
18357 5' -52.2 NC_004681.1 + 30973 0.66 0.892963
Target:  5'- gGUGuCGCGGggcu--CCAGCgggucggcggGCGGCGUg -3'
miRNA:   3'- -CAC-GCGCCaaaaauGGUCG----------UGUCGCA- -5'
18357 5' -52.2 NC_004681.1 + 17313 0.66 0.889303
Target:  5'- cGUGCccGCGGgacgcuacacgcaggAUCAGCGCGGCGa -3'
miRNA:   3'- -CACG--CGCCaaaaa----------UGGUCGUGUCGCa -5'
18357 5' -52.2 NC_004681.1 + 56017 0.66 0.886326
Target:  5'- gGUG-GCGGgcacgcgcacgACCuGCGCGGCGUa -3'
miRNA:   3'- -CACgCGCCaaaaa------UGGuCGUGUCGCA- -5'
18357 5' -52.2 NC_004681.1 + 14347 0.66 0.885575
Target:  5'- aUGCGCGGUUcucaGCCcGCGuCAGCu- -3'
miRNA:   3'- cACGCGCCAAaaa-UGGuCGU-GUCGca -5'
18357 5' -52.2 NC_004681.1 + 17398 0.67 0.876359
Target:  5'- --cCGCGGgcacgcgcGCCAGCAgGGCGUc -3'
miRNA:   3'- cacGCGCCaaaaa---UGGUCGUgUCGCA- -5'
18357 5' -52.2 NC_004681.1 + 64963 0.67 0.870007
Target:  5'- aUGCGCGaGccUUcACCAGCugGGUGa -3'
miRNA:   3'- cACGCGC-CaaAAaUGGUCGugUCGCa -5'
18357 5' -52.2 NC_004681.1 + 9317 0.67 0.870007
Target:  5'- -cGCGCGGguuc-AUCAcCACAGCGUu -3'
miRNA:   3'- caCGCGCCaaaaaUGGUcGUGUCGCA- -5'
18357 5' -52.2 NC_004681.1 + 75422 0.67 0.853426
Target:  5'- -cGCGCGGccg-UACUcgcGGCGCAGCc- -3'
miRNA:   3'- caCGCGCCaaaaAUGG---UCGUGUCGca -5'
18357 5' -52.2 NC_004681.1 + 4170 0.67 0.844774
Target:  5'- -aGCGCGGggUUggcgugggGCCAGCACuccuCGUu -3'
miRNA:   3'- caCGCGCCaaAAa-------UGGUCGUGuc--GCA- -5'
18357 5' -52.2 NC_004681.1 + 68975 0.67 0.844774
Target:  5'- -gGCGuCGGccgcgGCCAGUAgAGCGUg -3'
miRNA:   3'- caCGC-GCCaaaaaUGGUCGUgUCGCA- -5'
18357 5' -52.2 NC_004681.1 + 46877 0.68 0.825869
Target:  5'- -cGCGCGGgaug-ACCGugacgccgugcgcGCGCAGCGc -3'
miRNA:   3'- caCGCGCCaaaaaUGGU-------------CGUGUCGCa -5'
18357 5' -52.2 NC_004681.1 + 44683 0.68 0.807967
Target:  5'- aGUGCgGCGGcc---GCgAGCGCGGCGg -3'
miRNA:   3'- -CACG-CGCCaaaaaUGgUCGUGUCGCa -5'
18357 5' -52.2 NC_004681.1 + 30253 0.7 0.693363
Target:  5'- -aGCgGCGGcg---GCCGGUACGGCGUc -3'
miRNA:   3'- caCG-CGCCaaaaaUGGUCGUGUCGCA- -5'
18357 5' -52.2 NC_004681.1 + 50355 0.74 0.495848
Target:  5'- -gGCGCGGg----ACCAGgACAGCGc -3'
miRNA:   3'- caCGCGCCaaaaaUGGUCgUGUCGCa -5'
18357 5' -52.2 NC_004681.1 + 7319 0.74 0.464913
Target:  5'- -aGCGCGGUgucgccgUUACCGGCACcGGCc- -3'
miRNA:   3'- caCGCGCCAaa-----AAUGGUCGUG-UCGca -5'
18357 5' -52.2 NC_004681.1 + 73268 0.78 0.281649
Target:  5'- gGUGCGCGGcuggagUGCCAGUACuGCGg -3'
miRNA:   3'- -CACGCGCCaaaa--AUGGUCGUGuCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.