Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18404 | 3' | -56.4 | NC_004681.1 | + | 8751 | 0.66 | 0.767002 |
Target: 5'- gGCUGGuGACgGGCCGCgAGgaaaucagguCCGCGa -3' miRNA: 3'- gCGAUUcUUG-CCGGCGgUCau--------GGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 53092 | 0.66 | 0.767002 |
Target: 5'- aCGUUGGGAGCGaauguggaguaGCCGUCAaacuUGCCGCc -3' miRNA: 3'- -GCGAUUCUUGC-----------CGGCGGUc---AUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 59298 | 0.66 | 0.767002 |
Target: 5'- aGCU--GGACGaGCCGcCCGGgagGCCGUc -3' miRNA: 3'- gCGAuuCUUGC-CGGC-GGUCa--UGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 48777 | 0.66 | 0.767002 |
Target: 5'- gGCccaUGGGAGCuGGcCCGCCAGgguucCCGCc -3' miRNA: 3'- gCG---AUUCUUG-CC-GGCGGUCau---GGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 19662 | 0.66 | 0.767002 |
Target: 5'- uGCgGGGAACGGgaagCGCUGGaUGCCGCu -3' miRNA: 3'- gCGaUUCUUGCCg---GCGGUC-AUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 46396 | 0.66 | 0.767002 |
Target: 5'- uGC--AGGAUGGCUGCCc--GCCGUGg -3' miRNA: 3'- gCGauUCUUGCCGGCGGucaUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 625 | 0.66 | 0.757111 |
Target: 5'- uCGUUGAGGgacucGCGGCCGCggaAGaugGCCGgGu -3' miRNA: 3'- -GCGAUUCU-----UGCCGGCGg--UCa--UGGCgC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 7569 | 0.66 | 0.757111 |
Target: 5'- gGUgGAGGACGGCCG--GGgagGCCGUGa -3' miRNA: 3'- gCGaUUCUUGCCGGCggUCa--UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 7187 | 0.66 | 0.744075 |
Target: 5'- uCGCgcacGAGAagguacucgagaagGCGGCCgguGCCGGUaacggcgacACCGCGc -3' miRNA: 3'- -GCGa---UUCU--------------UGCCGG---CGGUCA---------UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 49466 | 0.66 | 0.73698 |
Target: 5'- cCGCUAcaAGGACGGCaagcccuacUGcCCAGUcGCCGgGg -3' miRNA: 3'- -GCGAU--UCUUGCCG---------GC-GGUCA-UGGCgC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 16030 | 0.66 | 0.73698 |
Target: 5'- uGCUGgcaAGGGC-GCCGCCGcuGUcACCGCa -3' miRNA: 3'- gCGAU---UCUUGcCGGCGGU--CA-UGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 10762 | 0.66 | 0.726761 |
Target: 5'- aCGC----GACGGCCGCgGGcACCGgGg -3' miRNA: 3'- -GCGauucUUGCCGGCGgUCaUGGCgC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 39581 | 0.66 | 0.726761 |
Target: 5'- uCGCUGccacCGGCCuugaGCCAGcgcACCGCGg -3' miRNA: 3'- -GCGAUucuuGCCGG----CGGUCa--UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 18730 | 0.66 | 0.726761 |
Target: 5'- uCGCcAAGGgcgACGGCgGCgAG-GCCGCGc -3' miRNA: 3'- -GCGaUUCU---UGCCGgCGgUCaUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 2132 | 0.67 | 0.709192 |
Target: 5'- cCGCggu--GCGGCCGCCcuccacgaccaccugGCCGCGg -3' miRNA: 3'- -GCGauucuUGCCGGCGGuca------------UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 12243 | 0.67 | 0.706069 |
Target: 5'- gGCUGAGucgGGUgGcCCGGUGCUGUGg -3' miRNA: 3'- gCGAUUCuugCCGgC-GGUCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 25167 | 0.67 | 0.695616 |
Target: 5'- gGCUGAGcGAgGuGCCGCCcGcGCCGCc -3' miRNA: 3'- gCGAUUC-UUgC-CGGCGGuCaUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 30849 | 0.67 | 0.695616 |
Target: 5'- uCGUgGAGGACGGCaCGCCGc--CCGCc -3' miRNA: 3'- -GCGaUUCUUGCCG-GCGGUcauGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 16772 | 0.67 | 0.695616 |
Target: 5'- uGCUcGGAGCGccGUCGCCAGcACCaGUGa -3' miRNA: 3'- gCGAuUCUUGC--CGGCGGUCaUGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 31999 | 0.67 | 0.695616 |
Target: 5'- cCGCgau-GGCGGCCGCCgcgagguaguAGUACUgGCGa -3' miRNA: 3'- -GCGauucUUGCCGGCGG----------UCAUGG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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