miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18438 3' -54 NC_004681.1 + 1750 0.66 0.900194
Target:  5'- -gUGGACGAuACcCAgguaguuccccAGGCCAUCGcCCu -3'
miRNA:   3'- ggGCCUGCU-UGaGU-----------UCCGGUAGCuGG- -5'
18438 3' -54 NC_004681.1 + 965 0.66 0.900194
Target:  5'- aCCGGcgcuACGAGCcCcGGGCauuCAUCGACa -3'
miRNA:   3'- gGGCC----UGCUUGaGuUCCG---GUAGCUGg -5'
18438 3' -54 NC_004681.1 + 54380 0.66 0.900194
Target:  5'- aCCCagcuggguGugGAGUUCGAGGUgGUCGACg -3'
miRNA:   3'- -GGGc-------CugCUUGAGUUCCGgUAGCUGg -5'
18438 3' -54 NC_004681.1 + 58814 0.66 0.900194
Target:  5'- gCCCGGGuCGAAUUCGc--CCAUCgGAUCa -3'
miRNA:   3'- -GGGCCU-GCUUGAGUuccGGUAG-CUGG- -5'
18438 3' -54 NC_004681.1 + 48114 0.66 0.900194
Target:  5'- cCCCGGugGGcaUCGAgaagcagauGGCCcgCGcCCu -3'
miRNA:   3'- -GGGCCugCUugAGUU---------CCGGuaGCuGG- -5'
18438 3' -54 NC_004681.1 + 3751 0.66 0.900194
Target:  5'- aUCUGGGCGGcgACgUCgAAGGCgAgggCGGCCu -3'
miRNA:   3'- -GGGCCUGCU--UG-AG-UUCCGgUa--GCUGG- -5'
18438 3' -54 NC_004681.1 + 3039 0.66 0.900194
Target:  5'- gCUGG-UGAACUCGgcgcgcguggcGGuGCCGUCGcCCa -3'
miRNA:   3'- gGGCCuGCUUGAGU-----------UC-CGGUAGCuGG- -5'
18438 3' -54 NC_004681.1 + 29677 0.66 0.900194
Target:  5'- uCUgGGGCGAACUaCAucuucacccuGGCguagGUCGACCg -3'
miRNA:   3'- -GGgCCUGCUUGA-GUu---------CCGg---UAGCUGG- -5'
18438 3' -54 NC_004681.1 + 54963 0.66 0.900194
Target:  5'- gCUGGACGAccGC-CAacAGGUCGUgGACa -3'
miRNA:   3'- gGGCCUGCU--UGaGU--UCCGGUAgCUGg -5'
18438 3' -54 NC_004681.1 + 30142 0.66 0.893404
Target:  5'- gCCUguGGGuCGGGCUC-AGGCgGcgCGGCCg -3'
miRNA:   3'- -GGG--CCU-GCUUGAGuUCCGgUa-GCUGG- -5'
18438 3' -54 NC_004681.1 + 18277 0.66 0.893404
Target:  5'- cUCCGGGCGcgg-CAcGGCCGcaguccUCGACUg -3'
miRNA:   3'- -GGGCCUGCuugaGUuCCGGU------AGCUGG- -5'
18438 3' -54 NC_004681.1 + 16018 0.66 0.893404
Target:  5'- gCCUGGAUGGuCUUGAccgcGGCCAcggCGAUCu -3'
miRNA:   3'- -GGGCCUGCUuGAGUU----CCGGUa--GCUGG- -5'
18438 3' -54 NC_004681.1 + 52932 0.66 0.893404
Target:  5'- gCCCGGA--AGCUCAGGGCaaaccaGUaUGAUCu -3'
miRNA:   3'- -GGGCCUgcUUGAGUUCCGg-----UA-GCUGG- -5'
18438 3' -54 NC_004681.1 + 69001 0.66 0.893404
Target:  5'- gCCGuGACGAuggucagcgcCUCGAuGG-CGUCGGCCg -3'
miRNA:   3'- gGGC-CUGCUu---------GAGUU-CCgGUAGCUGG- -5'
18438 3' -54 NC_004681.1 + 32764 0.66 0.893404
Target:  5'- gCCCGGuCGGcaauccGCU--GGGCCGcUCGuACCa -3'
miRNA:   3'- -GGGCCuGCU------UGAguUCCGGU-AGC-UGG- -5'
18438 3' -54 NC_004681.1 + 26081 0.66 0.886366
Target:  5'- aCCCGGGaacCGAAUUCGAGuaCGUCaACg -3'
miRNA:   3'- -GGGCCU---GCUUGAGUUCcgGUAGcUGg -5'
18438 3' -54 NC_004681.1 + 13007 0.66 0.886366
Target:  5'- aCCgCGGACG-ACgu--GGCCG-CGACUg -3'
miRNA:   3'- -GG-GCCUGCuUGaguuCCGGUaGCUGG- -5'
18438 3' -54 NC_004681.1 + 64895 0.66 0.886366
Target:  5'- gCgGGAUGcAGCUCGugGGGCgAgaCGACCg -3'
miRNA:   3'- gGgCCUGC-UUGAGU--UCCGgUa-GCUGG- -5'
18438 3' -54 NC_004681.1 + 16104 0.66 0.886366
Target:  5'- gCCgGGACGAugcccagauacGCg-GAGGCCAgcaucUgGACCg -3'
miRNA:   3'- -GGgCCUGCU-----------UGagUUCCGGU-----AgCUGG- -5'
18438 3' -54 NC_004681.1 + 38907 0.66 0.886366
Target:  5'- gCCCGGAUGGuCUCGGcGGaCUugcgcgCGGCCc -3'
miRNA:   3'- -GGGCCUGCUuGAGUU-CC-GGua----GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.