miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18522 5' -56.8 NC_004681.1 + 3406 0.66 0.696661
Target:  5'- -cCGCGGcGCCc-GCGCGAGC-CACg- -3'
miRNA:   3'- caGCGUC-CGGuaCGCGUUCGaGUGac -5'
18522 5' -56.8 NC_004681.1 + 61364 0.66 0.696661
Target:  5'- cGUCGCu-GCgGUGgGCAacAGCUCGCg- -3'
miRNA:   3'- -CAGCGucCGgUACgCGU--UCGAGUGac -5'
18522 5' -56.8 NC_004681.1 + 14443 0.66 0.692381
Target:  5'- --aGguGGCCucgauguucuugGCGCGcAGCUCAUUGg -3'
miRNA:   3'- cagCguCCGGua----------CGCGU-UCGAGUGAC- -5'
18522 5' -56.8 NC_004681.1 + 22637 0.66 0.685944
Target:  5'- --gGCAGcGCCGcGCGCAAGCagaUCGCc- -3'
miRNA:   3'- cagCGUC-CGGUaCGCGUUCG---AGUGac -5'
18522 5' -56.8 NC_004681.1 + 1794 0.66 0.685944
Target:  5'- cGUCGUAGGCCAgGCagaGCGAGUaCAUc- -3'
miRNA:   3'- -CAGCGUCCGGUaCG---CGUUCGaGUGac -5'
18522 5' -56.8 NC_004681.1 + 66737 0.66 0.685944
Target:  5'- -gCGguGGCCaAUGCGCAgaaGGC-CGgUGg -3'
miRNA:   3'- caGCguCCGG-UACGCGU---UCGaGUgAC- -5'
18522 5' -56.8 NC_004681.1 + 40100 0.66 0.653533
Target:  5'- --gGCAGGCCAagcgGCGCuGGUUCAa-- -3'
miRNA:   3'- cagCGUCCGGUa---CGCGuUCGAGUgac -5'
18522 5' -56.8 NC_004681.1 + 20194 0.66 0.642678
Target:  5'- aUCGUGGGCUcgGCGCcGGgUCcauuGCUGa -3'
miRNA:   3'- cAGCGUCCGGuaCGCGuUCgAG----UGAC- -5'
18522 5' -56.8 NC_004681.1 + 40020 0.66 0.641591
Target:  5'- --gGCGGGCgAaguacuccUGCGCAGGCUggccgcgCGCUGg -3'
miRNA:   3'- cagCGUCCGgU--------ACGCGUUCGA-------GUGAC- -5'
18522 5' -56.8 NC_004681.1 + 35072 0.67 0.588447
Target:  5'- aGUgGCAGGCUcgGUGC--GCUC-CUGa -3'
miRNA:   3'- -CAgCGUCCGGuaCGCGuuCGAGuGAC- -5'
18522 5' -56.8 NC_004681.1 + 6782 0.67 0.588447
Target:  5'- -cCGCucGGCCA-GUGCGAGCUgCACg- -3'
miRNA:   3'- caGCGu-CCGGUaCGCGUUCGA-GUGac -5'
18522 5' -56.8 NC_004681.1 + 70106 0.68 0.524613
Target:  5'- -gCGCacacGGGCCAUGCGUuc-CUCAUUGg -3'
miRNA:   3'- caGCG----UCCGGUACGCGuucGAGUGAC- -5'
18522 5' -56.8 NC_004681.1 + 17082 0.69 0.503895
Target:  5'- cUUGCGGGCCucguugagGCGC-AGCUCAgcCUGu -3'
miRNA:   3'- cAGCGUCCGGua------CGCGuUCGAGU--GAC- -5'
18522 5' -56.8 NC_004681.1 + 38795 0.7 0.425033
Target:  5'- -cUGCGGGCCGcGCGCAAGUcCGCc- -3'
miRNA:   3'- caGCGUCCGGUaCGCGUUCGaGUGac -5'
18522 5' -56.8 NC_004681.1 + 4097 0.7 0.405572
Target:  5'- gGUCGCuuccucucgugggAGGCaAUGCGCAAGCaggcCGCUGa -3'
miRNA:   3'- -CAGCG-------------UCCGgUACGCGUUCGa---GUGAC- -5'
18522 5' -56.8 NC_004681.1 + 53445 0.72 0.354006
Target:  5'- cUCGUcugGGGCCAUGCGUGAGCgcaggUACUu -3'
miRNA:   3'- cAGCG---UCCGGUACGCGUUCGa----GUGAc -5'
18522 5' -56.8 NC_004681.1 + 55916 0.72 0.354006
Target:  5'- -gCGCAGGUCGUGCGCGuGCcCGCc- -3'
miRNA:   3'- caGCGUCCGGUACGCGUuCGaGUGac -5'
18522 5' -56.8 NC_004681.1 + 16413 0.76 0.193511
Target:  5'- -aC-CAGGCCAUGCGCuacGGCUgGCUGa -3'
miRNA:   3'- caGcGUCCGGUACGCGu--UCGAgUGAC- -5'
18522 5' -56.8 NC_004681.1 + 67013 1.08 0.000884
Target:  5'- uGUCGCAGGCCAUGCGCAAGCUCACUGg -3'
miRNA:   3'- -CAGCGUCCGGUACGCGUUCGAGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.