miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18525 5' -53.1 NC_004681.1 + 66876 0.66 0.915699
Target:  5'- cCUGGAGAucGUUGACCUCcUCGUcaagucuGGCg -3'
miRNA:   3'- -GGCUUCUucCGACUGGAGcAGCA-------CUG- -5'
18525 5' -53.1 NC_004681.1 + 43973 0.66 0.910068
Target:  5'- aCCGAGcAGGGC-GGCga-GUCGUGACc -3'
miRNA:   3'- -GGCUUcUUCCGaCUGgagCAGCACUG- -5'
18525 5' -53.1 NC_004681.1 + 12381 0.66 0.903561
Target:  5'- gCCGAGGGuugccacagGGGC-GACCUCGggaGUcGGCc -3'
miRNA:   3'- -GGCUUCU---------UCCGaCUGGAGCag-CA-CUG- -5'
18525 5' -53.1 NC_004681.1 + 60078 0.66 0.903561
Target:  5'- aUCGAGGAc-GCgGGCUUCGagauUCGUGACu -3'
miRNA:   3'- -GGCUUCUucCGaCUGGAGC----AGCACUG- -5'
18525 5' -53.1 NC_004681.1 + 54275 0.66 0.896792
Target:  5'- gCCGAAGAGGcGCUGGuCCUCGcCc---- -3'
miRNA:   3'- -GGCUUCUUC-CGACU-GGAGCaGcacug -5'
18525 5' -53.1 NC_004681.1 + 41714 0.66 0.889765
Target:  5'- -gGAGGuGGGCg--UUUCGUCGUGGCg -3'
miRNA:   3'- ggCUUCuUCCGacuGGAGCAGCACUG- -5'
18525 5' -53.1 NC_004681.1 + 56508 0.66 0.889765
Target:  5'- gCCaGAAGAAguGGCUGgagcGCCUCGUCaaccgcuggGUGAa -3'
miRNA:   3'- -GG-CUUCUU--CCGAC----UGGAGCAG---------CACUg -5'
18525 5' -53.1 NC_004681.1 + 43904 0.67 0.867183
Target:  5'- gCGggGGuGGGCgcgGACCUCGUgGaaggaGGCa -3'
miRNA:   3'- gGCuuCU-UCCGa--CUGGAGCAgCa----CUG- -5'
18525 5' -53.1 NC_004681.1 + 18408 0.67 0.867183
Target:  5'- aCGAaccGGAAGGCugcUGACCgccaGUCGagGACu -3'
miRNA:   3'- gGCU---UCUUCCG---ACUGGag--CAGCa-CUG- -5'
18525 5' -53.1 NC_004681.1 + 23706 0.68 0.837296
Target:  5'- aCCaGGAGGAGGCgGAuggccacccccgugcCCUCGuagcccUCGUGGCu -3'
miRNA:   3'- -GG-CUUCUUCCGaCU---------------GGAGC------AGCACUG- -5'
18525 5' -53.1 NC_004681.1 + 53682 0.68 0.833801
Target:  5'- aCUGcGGGAGGUggagGACCUUGcCgGUGGCg -3'
miRNA:   3'- -GGCuUCUUCCGa---CUGGAGCaG-CACUG- -5'
18525 5' -53.1 NC_004681.1 + 29529 0.68 0.824922
Target:  5'- gCCGuuGcccGAGGC-GACCUCGcCaGUGACg -3'
miRNA:   3'- -GGCuuC---UUCCGaCUGGAGCaG-CACUG- -5'
18525 5' -53.1 NC_004681.1 + 37714 0.68 0.824922
Target:  5'- gCUGGAGAAGGUgcucucccgGgucuucagguacGCCUCGUaCGUGGCc -3'
miRNA:   3'- -GGCUUCUUCCGa--------C------------UGGAGCA-GCACUG- -5'
18525 5' -53.1 NC_004681.1 + 49512 0.68 0.815846
Target:  5'- cCCGAuuccAGucGGCcuUGACUUCGUCcucgGUGACc -3'
miRNA:   3'- -GGCU----UCuuCCG--ACUGGAGCAG----CACUG- -5'
18525 5' -53.1 NC_004681.1 + 19407 0.68 0.815846
Target:  5'- aCCGAAGGc-GCUGACCgaGUCGaagGACu -3'
miRNA:   3'- -GGCUUCUucCGACUGGagCAGCa--CUG- -5'
18525 5' -53.1 NC_004681.1 + 58928 0.68 0.806584
Target:  5'- gUCGAAGAGGuuGUUGGCCUCuGUCcggGUGAg -3'
miRNA:   3'- -GGCUUCUUC--CGACUGGAG-CAG---CACUg -5'
18525 5' -53.1 NC_004681.1 + 67658 0.69 0.787538
Target:  5'- gCGuGGAGGGCUGcUCUCGgggauguaGUGACg -3'
miRNA:   3'- gGCuUCUUCCGACuGGAGCag------CACUG- -5'
18525 5' -53.1 NC_004681.1 + 55306 0.7 0.737373
Target:  5'- aCC-AGGAcaAGGCUGAgUUCGUCGccaUGGCg -3'
miRNA:   3'- -GGcUUCU--UCCGACUgGAGCAGC---ACUG- -5'
18525 5' -53.1 NC_004681.1 + 67295 0.7 0.737373
Target:  5'- aCGggGAGGGC--AUCUCG-CGUGAg -3'
miRNA:   3'- gGCuuCUUCCGacUGGAGCaGCACUg -5'
18525 5' -53.1 NC_004681.1 + 27437 0.7 0.726988
Target:  5'- cUCGAAuGggGGCggugUGACCUCGaugUCGUG-Cg -3'
miRNA:   3'- -GGCUU-CuuCCG----ACUGGAGC---AGCACuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.