miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18529 5' -56.2 NC_004681.1 + 24983 0.66 0.761958
Target:  5'- -cGGGGGCUCUGgc-GGCAcaggCGUCGg -3'
miRNA:   3'- gaCUCCUGAGACagcCCGUua--GCGGC- -5'
18529 5' -56.2 NC_004681.1 + 34260 0.66 0.741894
Target:  5'- -cGGGGccuucgGCUUUGUCGGGCAcAUCuacCCGg -3'
miRNA:   3'- gaCUCC------UGAGACAGCCCGU-UAGc--GGC- -5'
18529 5' -56.2 NC_004681.1 + 2913 0.67 0.712081
Target:  5'- cCUGGGGGC-CUGgcuGGGCGAcggcaccgccacgcgCGCCGa -3'
miRNA:   3'- -GACUCCUGaGACag-CCCGUUa--------------GCGGC- -5'
18529 5' -56.2 NC_004681.1 + 39227 0.67 0.668929
Target:  5'- aUGAGcGCcUUGUCGcGGCGGUCGCgGa -3'
miRNA:   3'- gACUCcUGaGACAGC-CCGUUAGCGgC- -5'
18529 5' -56.2 NC_004681.1 + 3729 0.67 0.668929
Target:  5'- -cGAGGGCggcCUGcuucuugucgCGGGCGA-CGCCGu -3'
miRNA:   3'- gaCUCCUGa--GACa---------GCCCGUUaGCGGC- -5'
18529 5' -56.2 NC_004681.1 + 75026 0.69 0.604969
Target:  5'- gUGAGGGCUCcGU-GGGCuccguGUCGUCu -3'
miRNA:   3'- gACUCCUGAGaCAgCCCGu----UAGCGGc -5'
18529 5' -56.2 NC_004681.1 + 59956 0.69 0.583731
Target:  5'- -cGAGGA---UGUCccGGCAGUCGCCGa -3'
miRNA:   3'- gaCUCCUgagACAGc-CCGUUAGCGGC- -5'
18529 5' -56.2 NC_004681.1 + 53011 0.7 0.521156
Target:  5'- aUGAacGGCUCggaGUCGGGCAggauuuggauuuGUCGCCGc -3'
miRNA:   3'- gACUc-CUGAGa--CAGCCCGU------------UAGCGGC- -5'
18529 5' -56.2 NC_004681.1 + 71369 0.71 0.480914
Target:  5'- gCUGAGGcACUggaGUCGGGCAAUuuccaCGCUGg -3'
miRNA:   3'- -GACUCC-UGAga-CAGCCCGUUA-----GCGGC- -5'
18529 5' -56.2 NC_004681.1 + 40603 0.73 0.379055
Target:  5'- -cGAGGACUacGUCGGGCAcgAUUGCUa -3'
miRNA:   3'- gaCUCCUGAgaCAGCCCGU--UAGCGGc -5'
18529 5' -56.2 NC_004681.1 + 70613 1.09 0.001173
Target:  5'- gCUGAGGACUCUGUCGGGCAAUCGCCGg -3'
miRNA:   3'- -GACUCCUGAGACAGCCCGUUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.