Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 39093 | 0.66 | 0.561469 |
Target: 5'- aGC-CCugGuGGCcacCUGCGCGGGCAa -3' miRNA: 3'- gCGaGGugCcUCGua-GGCGCGCUCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 16592 | 0.66 | 0.551238 |
Target: 5'- aGUUCCAguugcCGGGGCG-CgGCGcCGAGUAg -3' miRNA: 3'- gCGAGGU-----GCCUCGUaGgCGC-GCUCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 33658 | 0.66 | 0.530954 |
Target: 5'- ---cUCACGGAGCAgguggcgaaccUCCGCGCGcGUg -3' miRNA: 3'- gcgaGGUGCCUCGU-----------AGGCGCGCuCGu -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 39431 | 0.66 | 0.530954 |
Target: 5'- gGCcCCuCGGAGCcguGUCCaGCGCG-GCGc -3' miRNA: 3'- gCGaGGuGCCUCG---UAGG-CGCGCuCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 60593 | 0.66 | 0.530954 |
Target: 5'- uGCUCgACGaGGCcgCCGCuGCG-GCAc -3' miRNA: 3'- gCGAGgUGCcUCGuaGGCG-CGCuCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 14477 | 0.66 | 0.523918 |
Target: 5'- cCGcCUCCGCcGAGCAgggcgcgcugguggCCggugcugGCGCGAGCAa -3' miRNA: 3'- -GC-GAGGUGcCUCGUa-------------GG-------CGCGCUCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 19118 | 0.66 | 0.520914 |
Target: 5'- uCGUUCCA-GGuGUcgCCGUcuugGCGAGCAc -3' miRNA: 3'- -GCGAGGUgCCuCGuaGGCG----CGCUCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 6500 | 0.67 | 0.495172 |
Target: 5'- uCGCUCCACGGAcucggggaagaccgaGCcgCgGCGCcucauGCAg -3' miRNA: 3'- -GCGAGGUGCCU---------------CGuaGgCGCGcu---CGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 17421 | 0.67 | 0.481552 |
Target: 5'- gCGCUgaucCUGCGuGuAGCGUCC-CGCGGGCAc -3' miRNA: 3'- -GCGA----GGUGC-C-UCGUAGGcGCGCUCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 72688 | 0.67 | 0.481552 |
Target: 5'- aCGCUCCACaGuGaauucUCCGCGCGcGGUAg -3' miRNA: 3'- -GCGAGGUGcCuCgu---AGGCGCGC-UCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 37648 | 0.67 | 0.478657 |
Target: 5'- gCGCUCCgacuucuGCGGGGCcucgccagcggCCGCGCGucGCu -3' miRNA: 3'- -GCGAGG-------UGCCUCGua---------GGCGCGCu-CGu -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 70650 | 0.67 | 0.471936 |
Target: 5'- uGCcCgCACGG-GCAUaucCCGUGCGGGCu -3' miRNA: 3'- gCGaG-GUGCCuCGUA---GGCGCGCUCGu -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 12413 | 0.67 | 0.46907 |
Target: 5'- gGCUCC-UGGAGCAcgauggucaccucaUCCGUGcCGAGgGu -3' miRNA: 3'- gCGAGGuGCCUCGU--------------AGGCGC-GCUCgU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 41938 | 0.67 | 0.462417 |
Target: 5'- gGCUCCGCGGAG-AUCgGCcCGcuGCAg -3' miRNA: 3'- gCGAGGUGCCUCgUAGgCGcGCu-CGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 1157 | 0.68 | 0.447401 |
Target: 5'- gGCUCCAuCGGgccguacauccucucGGCGUCCGCGaCGuauuugucAGCGg -3' miRNA: 3'- gCGAGGU-GCC---------------UCGUAGGCGC-GC--------UCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 41817 | 0.68 | 0.44369 |
Target: 5'- cCGcCUCC-CGGGGCAUuuccCUGCaGCGGGCc -3' miRNA: 3'- -GC-GAGGuGCCUCGUA----GGCG-CGCUCGu -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 18260 | 0.68 | 0.44369 |
Target: 5'- aGCUUCA-GGAGCGgcaacUCCGgGCGcGGCAc -3' miRNA: 3'- gCGAGGUgCCUCGU-----AGGCgCGC-UCGU- -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 61669 | 0.68 | 0.44369 |
Target: 5'- cCGCcgCCGCGGAgGCcgCCGC-CGAGg- -3' miRNA: 3'- -GCGa-GGUGCCU-CGuaGGCGcGCUCgu -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 8479 | 0.68 | 0.425396 |
Target: 5'- aGCUCCG-GGuuCAUgaugaCCGCGCGAGCc -3' miRNA: 3'- gCGAGGUgCCucGUA-----GGCGCGCUCGu -5' |
|||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 3400 | 0.69 | 0.390199 |
Target: 5'- aGUuggCCGCGGcGC--CCGCGCGAGCc -3' miRNA: 3'- gCGa--GGUGCCuCGuaGGCGCGCUCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home