miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18536 3' -56 NC_004681.1 + 12180 0.66 0.749115
Target:  5'- uGGCGuCUaCCCGGACCCgGCGUCGGGc- -3'
miRNA:   3'- -UCGC-GA-GGGUUUGGGaCGUGGUUCac -5'
18536 3' -56 NC_004681.1 + 16231 0.66 0.749115
Target:  5'- cGGCGgaaaUCCCAacGACCCgaacaaGCACCGcgaguacacGGUGg -3'
miRNA:   3'- -UCGCg---AGGGU--UUGGGa-----CGUGGU---------UCAC- -5'
18536 3' -56 NC_004681.1 + 22407 0.66 0.728404
Target:  5'- gGGgGCUUaCCGGgcucACCCUGCGCCAu--- -3'
miRNA:   3'- -UCgCGAG-GGUU----UGGGACGUGGUucac -5'
18536 3' -56 NC_004681.1 + 3153 0.66 0.717902
Target:  5'- uGCGCaggacugccaCCAGGCCCUugGCGCCGcgGGUGc -3'
miRNA:   3'- uCGCGag--------GGUUUGGGA--CGUGGU--UCAC- -5'
18536 3' -56 NC_004681.1 + 48212 0.66 0.717902
Target:  5'- aAGCGCgCCUAcaagcuGGCCCU-CGCCGAGg- -3'
miRNA:   3'- -UCGCGaGGGU------UUGGGAcGUGGUUCac -5'
18536 3' -56 NC_004681.1 + 7490 0.66 0.707317
Target:  5'- cGGaCGCUCCgguCGAugCCUGgGCCuGGGUGc -3'
miRNA:   3'- -UC-GCGAGG---GUUugGGACgUGG-UUCAC- -5'
18536 3' -56 NC_004681.1 + 51849 0.66 0.696661
Target:  5'- cGGCGUUaCUCuuGCCC-GCGCCGGGg- -3'
miRNA:   3'- -UCGCGA-GGGuuUGGGaCGUGGUUCac -5'
18536 3' -56 NC_004681.1 + 19023 0.66 0.695592
Target:  5'- uGCGCUCCCGcgacgggAGCCUgggGaccgGCCAGGUa -3'
miRNA:   3'- uCGCGAGGGU-------UUGGGa--Cg---UGGUUCAc -5'
18536 3' -56 NC_004681.1 + 31481 0.67 0.675177
Target:  5'- cGCGC-CCCGuAGCCCU-CACCGuucGUGu -3'
miRNA:   3'- uCGCGaGGGU-UUGGGAcGUGGUu--CAC- -5'
18536 3' -56 NC_004681.1 + 71417 0.67 0.66437
Target:  5'- -aCGgUCCCAGaAUCCUGCACCAu--- -3'
miRNA:   3'- ucGCgAGGGUU-UGGGACGUGGUucac -5'
18536 3' -56 NC_004681.1 + 4067 0.67 0.66437
Target:  5'- gAGUGCUggcCCCAcgccAACCCcGCGCUggGUc -3'
miRNA:   3'- -UCGCGA---GGGU----UUGGGaCGUGGuuCAc -5'
18536 3' -56 NC_004681.1 + 36105 0.67 0.639419
Target:  5'- cGUGCUCCCAucgaaugcgcgggcAAUCUUGCGCCGc--- -3'
miRNA:   3'- uCGCGAGGGU--------------UUGGGACGUGGUucac -5'
18536 3' -56 NC_004681.1 + 47625 0.68 0.610093
Target:  5'- cAGCGCaCCCAGccaucggucacGCCCUGcUugUAGGUGu -3'
miRNA:   3'- -UCGCGaGGGUU-----------UGGGAC-GugGUUCAC- -5'
18536 3' -56 NC_004681.1 + 50657 0.68 0.610093
Target:  5'- aAGCGCUgCgAGACgCCUaccGCACCGGGg- -3'
miRNA:   3'- -UCGCGAgGgUUUG-GGA---CGUGGUUCac -5'
18536 3' -56 NC_004681.1 + 18199 0.68 0.588447
Target:  5'- gAGCGcCUCCCGGcgcACCCccgggUGUACCGGGc- -3'
miRNA:   3'- -UCGC-GAGGGUU---UGGG-----ACGUGGUUCac -5'
18536 3' -56 NC_004681.1 + 5918 0.68 0.588447
Target:  5'- aGGCGCUUCUcGugCCgcaGUACCAGGUu -3'
miRNA:   3'- -UCGCGAGGGuUugGGa--CGUGGUUCAc -5'
18536 3' -56 NC_004681.1 + 53312 0.68 0.588447
Target:  5'- uGCGCUUCCGggUCCUggaGCACUAcaAGUa -3'
miRNA:   3'- uCGCGAGGGUuuGGGA---CGUGGU--UCAc -5'
18536 3' -56 NC_004681.1 + 3026 0.69 0.566944
Target:  5'- cAGCgGCaaugCCCGcACCCgcgGCGCCAAGg- -3'
miRNA:   3'- -UCG-CGa---GGGUuUGGGa--CGUGGUUCac -5'
18536 3' -56 NC_004681.1 + 19216 0.69 0.545647
Target:  5'- aGGCGUccaCCCAgcugcgAACCUcGCGCCGGGUGu -3'
miRNA:   3'- -UCGCGa--GGGU------UUGGGaCGUGGUUCAC- -5'
18536 3' -56 NC_004681.1 + 53411 0.69 0.545647
Target:  5'- uAGUGCUCCaGGACCCggaagcGCACCcAGUu -3'
miRNA:   3'- -UCGCGAGGgUUUGGGa-----CGUGGuUCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.