miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18538 3' -52.5 NC_004681.1 + 67594 0.66 0.911769
Target:  5'- --uCGCGCAGCAggcCGUACAgAaucGUCCCGc -3'
miRNA:   3'- cguGUGUGUCGU---GCGUGUgU---UAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 69604 0.66 0.911769
Target:  5'- -aGCACACGGCgugGCGCACcuCGcgCaCCAg -3'
miRNA:   3'- cgUGUGUGUCG---UGCGUGu-GUuaG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 42432 0.66 0.911768
Target:  5'- -gGCGCGCAGCcUGCACGa---CCCGu -3'
miRNA:   3'- cgUGUGUGUCGuGCGUGUguuaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 44412 0.66 0.911768
Target:  5'- cGC-CACAgGGUgugggACGCGCGCg--CCCAg -3'
miRNA:   3'- -CGuGUGUgUCG-----UGCGUGUGuuaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 38893 0.66 0.905188
Target:  5'- gGCGgACuu-GCGCGCGgccCGCAGUUCCAu -3'
miRNA:   3'- -CGUgUGuguCGUGCGU---GUGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 57498 0.66 0.898333
Target:  5'- aGCAuCGCGgAGCGCGCugAgAuguUCCUg -3'
miRNA:   3'- -CGU-GUGUgUCGUGCGugUgUu--AGGGu -5'
18538 3' -52.5 NC_004681.1 + 11518 0.66 0.898333
Target:  5'- aGUGCuACACGGCcCGCuACugGGUCCa- -3'
miRNA:   3'- -CGUG-UGUGUCGuGCG-UGugUUAGGgu -5'
18538 3' -52.5 NC_004681.1 + 64946 0.66 0.897633
Target:  5'- aGCugGgugagguCGCGGCGCagGUAC-CAGUCCCAc -3'
miRNA:   3'- -CGugU-------GUGUCGUG--CGUGuGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 22029 0.66 0.891208
Target:  5'- -aGCGCG-AGCGCGCGCAaccaAGUCCa- -3'
miRNA:   3'- cgUGUGUgUCGUGCGUGUg---UUAGGgu -5'
18538 3' -52.5 NC_004681.1 + 74145 0.66 0.891208
Target:  5'- --uUACugGGUACGCGCACGGagcgCUCAg -3'
miRNA:   3'- cguGUGugUCGUGCGUGUGUUa---GGGU- -5'
18538 3' -52.5 NC_004681.1 + 38992 0.66 0.891208
Target:  5'- cCACGC-CAGCAgGCugGCcuUCuCCAg -3'
miRNA:   3'- cGUGUGuGUCGUgCGugUGuuAG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 70200 0.66 0.891208
Target:  5'- -aACGCAUGGCccgugUGCGCGCGGUCUCu -3'
miRNA:   3'- cgUGUGUGUCGu----GCGUGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 22727 0.66 0.883817
Target:  5'- -uGCGCGCGGCGCuGCcCGCGGUgUCCGu -3'
miRNA:   3'- cgUGUGUGUCGUG-CGuGUGUUA-GGGU- -5'
18538 3' -52.5 NC_004681.1 + 11122 0.67 0.876165
Target:  5'- cGCAC-CGC-GUGCGCACACAcuggCUCAc -3'
miRNA:   3'- -CGUGuGUGuCGUGCGUGUGUua--GGGU- -5'
18538 3' -52.5 NC_004681.1 + 43373 0.67 0.876165
Target:  5'- uCAUAUcccCGGCGCGCACA--GUCCCu -3'
miRNA:   3'- cGUGUGu--GUCGUGCGUGUguUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 39325 0.67 0.876165
Target:  5'- cGCgGCGCACGGUGaGCugACAGUCgaCCAg -3'
miRNA:   3'- -CG-UGUGUGUCGUgCGugUGUUAG--GGU- -5'
18538 3' -52.5 NC_004681.1 + 29719 0.67 0.876165
Target:  5'- cCGCGCGCAGCugauacACGCGCGCuuUCg-- -3'
miRNA:   3'- cGUGUGUGUCG------UGCGUGUGuuAGggu -5'
18538 3' -52.5 NC_004681.1 + 48886 0.67 0.868258
Target:  5'- cGCGCcugucuCACGuCACGCGgGCAccGUCCCGu -3'
miRNA:   3'- -CGUGu-----GUGUcGUGCGUgUGU--UAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 14576 0.67 0.865838
Target:  5'- aGCGCGCccugcucggcggagGCGGCGCGCGCgGCGuUCgCCu -3'
miRNA:   3'- -CGUGUG--------------UGUCGUGCGUG-UGUuAG-GGu -5'
18538 3' -52.5 NC_004681.1 + 40486 0.67 0.860104
Target:  5'- -gACAC-CGGcCACGCugGCGGUgCCGc -3'
miRNA:   3'- cgUGUGuGUC-GUGCGugUGUUAgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.