miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 35955 0.66 0.572207
Target:  5'- gCCGaacacaCCagGCGugGUCGAGGCGuucGCGCCg -3'
miRNA:   3'- -GGCca----GG--UGCugCGGCUCUGC---CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 2161 0.66 0.572207
Target:  5'- aCCGGUCCACaAgGCCccaaggGAGACacggguucccaaGGC-CCa -3'
miRNA:   3'- -GGCCAGGUGcUgCGG------CUCUG------------CCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 42468 0.66 0.572207
Target:  5'- aCUGGUCgACGuACGCCucGAacuccuucacguCGGCGCg -3'
miRNA:   3'- -GGCCAGgUGC-UGCGGcuCU------------GCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 11957 0.66 0.572207
Target:  5'- gCGGaCCAaGAuCGCCGAGGCaucGCGCUc -3'
miRNA:   3'- gGCCaGGUgCU-GCGGCUCUGc--CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 28780 0.66 0.572207
Target:  5'- aCGGugUCCGgGAUcggaaaGCCGAGAaCGGUuguGCCa -3'
miRNA:   3'- gGCC--AGGUgCUG------CGGCUCU-GCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 43520 0.66 0.572207
Target:  5'- aCgGGUCCuuGccccaGCCcuuGAGGCGGCGCa -3'
miRNA:   3'- -GgCCAGGugCug---CGG---CUCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 23376 0.66 0.565976
Target:  5'- aCGGaCCugGG-GCCGAGcuugaaggcuggcuCGGCACUg -3'
miRNA:   3'- gGCCaGGugCUgCGGCUCu-------------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 27977 0.66 0.561832
Target:  5'- aCGG-CCAUGAUGCCac--CGcGCACCa -3'
miRNA:   3'- gGCCaGGUGCUGCGGcucuGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 18968 0.66 0.561832
Target:  5'- aCGuUCCACGAacugcaaaGCCuguaGGAgGGCACCu -3'
miRNA:   3'- gGCcAGGUGCUg-------CGGc---UCUgCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 36721 0.66 0.561832
Target:  5'- aCGG-CCugGACGCgGGGcaucugggccauGCGGaACCu -3'
miRNA:   3'- gGCCaGGugCUGCGgCUC------------UGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 31702 0.66 0.561832
Target:  5'- cCCGGUCCcCuuCGuuGGGAcCGGCuaggguaaACCa -3'
miRNA:   3'- -GGCCAGGuGcuGCggCUCU-GCCG--------UGG- -5'
18559 3' -59.2 NC_004682.1 + 1945 0.66 0.561832
Target:  5'- cUCGGUCCcCGAUGgCGAGAucUGGauCGCUg -3'
miRNA:   3'- -GGCCAGGuGCUGCgGCUCU--GCC--GUGG- -5'
18559 3' -59.2 NC_004682.1 + 10999 0.66 0.559763
Target:  5'- uCCcGUUCGCGGCuggcaagagcgcaGCCGAGgcaucggGCGGCGCg -3'
miRNA:   3'- -GGcCAGGUGCUG-------------CGGCUC-------UGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 14487 0.66 0.541243
Target:  5'- aCCgGGUCCGCaGgGUCGAGcACGuCACCc -3'
miRNA:   3'- -GG-CCAGGUGcUgCGGCUC-UGCcGUGG- -5'
18559 3' -59.2 NC_004682.1 + 22052 0.66 0.541243
Target:  5'- cCCuGUCCGCucucggccuGACgGCCugugaggggGAGACGaGCACCa -3'
miRNA:   3'- -GGcCAGGUG---------CUG-CGG---------CUCUGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 35850 0.66 0.541243
Target:  5'- cCCGG-CgCAcCGACGCCuuGugGGCguggaaGCCg -3'
miRNA:   3'- -GGCCaG-GU-GCUGCGGcuCugCCG------UGG- -5'
18559 3' -59.2 NC_004682.1 + 14667 0.66 0.541243
Target:  5'- aCCGG-CCugugGACGCCGAccggcuggGACaGCAUCg -3'
miRNA:   3'- -GGCCaGGug--CUGCGGCU--------CUGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4894 0.66 0.541243
Target:  5'- cUCGGUgagCC-CG-CGCUacucGGGCGGCACCa -3'
miRNA:   3'- -GGCCA---GGuGCuGCGGc---UCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 11845 0.66 0.531043
Target:  5'- cCCGuUCCACGGCGauGAGAcgccuuCGGCGUCg -3'
miRNA:   3'- -GGCcAGGUGCUGCggCUCU------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 9910 0.66 0.531043
Target:  5'- uCUGGcgcgaUCCGuCGACGCCGAcGuACGcCGCCa -3'
miRNA:   3'- -GGCC-----AGGU-GCUGCGGCU-C-UGCcGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.