miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18562 3' -56.7 NC_004682.1 + 35409 0.66 0.637842
Target:  5'- uGCuUGCCCUcGUcgUCCuUCGCgaUGGAGUCCAg -3'
miRNA:   3'- -CG-GCGGGA-CA--AGG-AGUG--GCUUCAGGU- -5'
18562 3' -56.7 NC_004682.1 + 14523 0.66 0.594123
Target:  5'- aCgGCCCUGgcaCUCGCC--AGUCCGu -3'
miRNA:   3'- cGgCGGGACaagGAGUGGcuUCAGGU- -5'
18562 3' -56.7 NC_004682.1 + 47615 0.67 0.572418
Target:  5'- uGUCGCCCUGUgCCgcgcCGCCGAcguAGgugaugCCGu -3'
miRNA:   3'- -CGGCGGGACAaGGa---GUGGCU---UCa-----GGU- -5'
18562 3' -56.7 NC_004682.1 + 25644 0.67 0.561634
Target:  5'- cGCUGUCCggGcgCUcCACUGggGUCCGg -3'
miRNA:   3'- -CGGCGGGa-CaaGGaGUGGCuuCAGGU- -5'
18562 3' -56.7 NC_004682.1 + 42177 0.68 0.508697
Target:  5'- gGCCGCguCCUGcUCCUCGgUGAGGgCCu -3'
miRNA:   3'- -CGGCG--GGACaAGGAGUgGCUUCaGGu -5'
18562 3' -56.7 NC_004682.1 + 2898 0.68 0.488104
Target:  5'- cGCUGCCCUGaUCC-CACCGGAc---- -3'
miRNA:   3'- -CGGCGGGACaAGGaGUGGCUUcaggu -5'
18562 3' -56.7 NC_004682.1 + 15757 0.68 0.467912
Target:  5'- aGCuCGCCCUGgUCCUCAUCaaGGAGcuaCCGg -3'
miRNA:   3'- -CG-GCGGGACaAGGAGUGG--CUUCa--GGU- -5'
18562 3' -56.7 NC_004682.1 + 36561 0.69 0.448158
Target:  5'- cGCCGCCCUGcggCUUGCCGccGUCgGa -3'
miRNA:   3'- -CGGCGGGACaagGAGUGGCuuCAGgU- -5'
18562 3' -56.7 NC_004682.1 + 33906 0.71 0.348544
Target:  5'- uGCCGCCUUGaucccgUCCaUGCCGAGG-CCAc -3'
miRNA:   3'- -CGGCGGGACa-----AGGaGUGGCUUCaGGU- -5'
18562 3' -56.7 NC_004682.1 + 40121 0.71 0.340307
Target:  5'- gGCUGCCgaG-UCgUCAUCGAGGUCUAg -3'
miRNA:   3'- -CGGCGGgaCaAGgAGUGGCUUCAGGU- -5'
18562 3' -56.7 NC_004682.1 + 35382 0.77 0.129193
Target:  5'- aGCCGCCCagc-CCUCGCgGGAGUCCu -3'
miRNA:   3'- -CGGCGGGacaaGGAGUGgCUUCAGGu -5'
18562 3' -56.7 NC_004682.1 + 38397 1.11 0.000499
Target:  5'- cGCCGCCCUGUUCCUCACCGAAGUCCAg -3'
miRNA:   3'- -CGGCGGGACAAGGAGUGGCUUCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.