miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18567 5' -59.2 NC_004682.1 + 9375 0.66 0.466062
Target:  5'- aCCUacacGacaUGGCGCGGUCGAcgagcGCCUGCgUGGu -3'
miRNA:   3'- -GGA----Cg--ACCGCGUCGGUU-----CGGACG-ACU- -5'
18567 5' -59.2 NC_004682.1 + 31824 0.66 0.456141
Target:  5'- gUCUGCUGGCcuuguaCGGCCucguccaucGAGCCgacGUUGAa -3'
miRNA:   3'- -GGACGACCGc-----GUCGG---------UUCGGa--CGACU- -5'
18567 5' -59.2 NC_004682.1 + 9034 0.66 0.456141
Target:  5'- gCUGCUGGCGCGagucCCGAcGCUguacuucagcGCUGAc -3'
miRNA:   3'- gGACGACCGCGUc---GGUU-CGGa---------CGACU- -5'
18567 5' -59.2 NC_004682.1 + 17627 0.66 0.456141
Target:  5'- gCUGCUGGUGC--CCAA-CCUGCaGAc -3'
miRNA:   3'- gGACGACCGCGucGGUUcGGACGaCU- -5'
18567 5' -59.2 NC_004682.1 + 24914 0.66 0.446336
Target:  5'- gCUGgaGGCGCAaCCGcGCCgugcgucugGCUGGg -3'
miRNA:   3'- gGACgaCCGCGUcGGUuCGGa--------CGACU- -5'
18567 5' -59.2 NC_004682.1 + 22860 0.66 0.445362
Target:  5'- --cGCUGGUGCgcgguggcaucauGGCCGucgucGGCCUGgUGGc -3'
miRNA:   3'- ggaCGACCGCG-------------UCGGU-----UCGGACgACU- -5'
18567 5' -59.2 NC_004682.1 + 27174 0.66 0.444389
Target:  5'- cCCUGCUcGGCGacccacuucgcGCCGGucuCCUGCUGGg -3'
miRNA:   3'- -GGACGA-CCGCgu---------CGGUUc--GGACGACU- -5'
18567 5' -59.2 NC_004682.1 + 33481 0.66 0.436649
Target:  5'- gCCgccGUUGcCGCcGCCAgcGGCCUGCUGc -3'
miRNA:   3'- -GGa--CGACcGCGuCGGU--UCGGACGACu -5'
18567 5' -59.2 NC_004682.1 + 34175 0.66 0.427085
Target:  5'- gCUGCcgcccGaGCGCAuGCCGcgcagcGCCUGCUGGa -3'
miRNA:   3'- gGACGa----C-CGCGU-CGGUu-----CGGACGACU- -5'
18567 5' -59.2 NC_004682.1 + 16659 0.66 0.417645
Target:  5'- cCCUGgUGGagucgGCAGCCGA-CCUGUcucUGAa -3'
miRNA:   3'- -GGACgACCg----CGUCGGUUcGGACG---ACU- -5'
18567 5' -59.2 NC_004682.1 + 17343 0.67 0.390107
Target:  5'- --aGCUGGCcccGCAG-CAGGCC-GCUGGc -3'
miRNA:   3'- ggaCGACCG---CGUCgGUUCGGaCGACU- -5'
18567 5' -59.2 NC_004682.1 + 24502 0.67 0.363783
Target:  5'- aCC-GCUGGCauCAGCCAGGUCgGCgcgGAc -3'
miRNA:   3'- -GGaCGACCGc-GUCGGUUCGGaCGa--CU- -5'
18567 5' -59.2 NC_004682.1 + 45640 0.68 0.34693
Target:  5'- --cGgUGGUGCAGUC-GGCCUGCUu- -3'
miRNA:   3'- ggaCgACCGCGUCGGuUCGGACGAcu -5'
18567 5' -59.2 NC_004682.1 + 46500 0.68 0.314156
Target:  5'- gCCUGCgauccaGGCGCGGCgGuagcucuugagcuGGCC-GCUGGu -3'
miRNA:   3'- -GGACGa-----CCGCGUCGgU-------------UCGGaCGACU- -5'
18567 5' -59.2 NC_004682.1 + 41121 0.7 0.251223
Target:  5'- aUCUGCUGGUGCAGUCGGuucGCCUucggGgUGGg -3'
miRNA:   3'- -GGACGACCGCGUCGGUU---CGGA----CgACU- -5'
18567 5' -59.2 NC_004682.1 + 34305 1.1 0.000249
Target:  5'- uCCUGCUGGCGCAGCCAAGCCUGCUGAg -3'
miRNA:   3'- -GGACGACCGCGUCGGUUCGGACGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.