miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18572 3' -54.6 NC_004682.1 + 4613 0.66 0.770965
Target:  5'- aUCGUCCcgGAgGCCacgcucgCUGcCGAGAUc -3'
miRNA:   3'- -GGCAGGuaCUgCGGcaa----GAC-GCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 8654 0.66 0.750476
Target:  5'- gCCGUCU---GCGCgguccucgCGUUCggcGCGAGACa -3'
miRNA:   3'- -GGCAGGuacUGCG--------GCAAGa--CGCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 41325 0.67 0.716728
Target:  5'- cUCGcCCuUGACGCCGaacagcagccgCUGgGGGACg -3'
miRNA:   3'- -GGCaGGuACUGCGGCaa---------GACgCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 9561 0.67 0.686483
Target:  5'- aCCGgCCA-GACGCUGUUCgacGCGuaccuGGCu -3'
miRNA:   3'- -GGCaGGUaCUGCGGCAAGa--CGCu----CUG- -5'
18572 3' -54.6 NC_004682.1 + 13050 0.67 0.686483
Target:  5'- -gGUCgAagcgGAUGCCGUUCUGCGGc-- -3'
miRNA:   3'- ggCAGgUa---CUGCGGCAAGACGCUcug -5'
18572 3' -54.6 NC_004682.1 + 11802 0.69 0.565858
Target:  5'- gCCGUCUcgG-CGUCGUggaccgGCGAGGCc -3'
miRNA:   3'- -GGCAGGuaCuGCGGCAaga---CGCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 30543 0.69 0.541066
Target:  5'- gCCGUUCAuccgugcccagagcUGGCuGCCGUUCUccGaCGAGACc -3'
miRNA:   3'- -GGCAGGU--------------ACUG-CGGCAAGA--C-GCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 13801 0.71 0.471263
Target:  5'- gCGUCaagGACGCCGUcuaUGCcGAGGCg -3'
miRNA:   3'- gGCAGguaCUGCGGCAag-ACG-CUCUG- -5'
18572 3' -54.6 NC_004682.1 + 32884 0.71 0.461229
Target:  5'- uCCGUCgGgucGACGUaacgCUGCGAGACg -3'
miRNA:   3'- -GGCAGgUa--CUGCGgcaaGACGCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 603 0.71 0.451308
Target:  5'- gUGcUCCGUGACGCgGgcuggaUCUGUGAGAUc -3'
miRNA:   3'- gGC-AGGUACUGCGgCa-----AGACGCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 23217 0.71 0.431825
Target:  5'- gCCGUCCGUGAgGg-GUUCcGCGAGAUc -3'
miRNA:   3'- -GGCAGGUACUgCggCAAGaCGCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 40427 0.72 0.390757
Target:  5'- cCCGUgCAggaacaccaacggGACGCCGguaccuacCUGCGAGACc -3'
miRNA:   3'- -GGCAgGUa------------CUGCGGCaa------GACGCUCUG- -5'
18572 3' -54.6 NC_004682.1 + 33464 0.79 0.15688
Target:  5'- -gGUUgGUGACGCCGUcgagggUCUGCGAGAg -3'
miRNA:   3'- ggCAGgUACUGCGGCA------AGACGCUCUg -5'
18572 3' -54.6 NC_004682.1 + 33507 1.1 0.000959
Target:  5'- gCCGUCCAUGACGCCGUUCUGCGAGACc -3'
miRNA:   3'- -GGCAGGUACUGCGGCAAGACGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.