miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18574 3' -58.5 NC_004682.1 + 44917 0.66 0.554613
Target:  5'- uGCCgUCGAgcUGCUggaacgcccacgacuUCGGGUGGACgCCgucGCg -3'
miRNA:   3'- -CGG-AGCU--ACGG---------------AGCCCGCUUG-GGa--CG- -5'
18574 3' -58.5 NC_004682.1 + 43618 0.66 0.550396
Target:  5'- -gCUCGAUGCCUgGGGUGccgucaggggcGAUCCa-- -3'
miRNA:   3'- cgGAGCUACGGAgCCCGC-----------UUGGGacg -5'
18574 3' -58.5 NC_004682.1 + 1450 0.66 0.550396
Target:  5'- aUCUCGAcGCCa-GcGGCGAGCCCg-- -3'
miRNA:   3'- cGGAGCUaCGGagC-CCGCUUGGGacg -5'
18574 3' -58.5 NC_004682.1 + 40398 0.66 0.550396
Target:  5'- uCCUCGuagGCCaaggCGcucacGGUGAGCCCgUGCa -3'
miRNA:   3'- cGGAGCua-CGGa---GC-----CCGCUUGGG-ACG- -5'
18574 3' -58.5 NC_004682.1 + 36330 0.66 0.529466
Target:  5'- uGCCa-GG-GCCgucgucgCGGGUGAcgugcucgACCCUGCg -3'
miRNA:   3'- -CGGagCUaCGGa------GCCCGCU--------UGGGACG- -5'
18574 3' -58.5 NC_004682.1 + 50075 0.66 0.529466
Target:  5'- uGgCUCGuaacUGCCgcuucCGGGCGuuGCCCUcaGCg -3'
miRNA:   3'- -CgGAGCu---ACGGa----GCCCGCu-UGGGA--CG- -5'
18574 3' -58.5 NC_004682.1 + 48681 0.66 0.51911
Target:  5'- cCCUUGggGCCUUGuGGacCGGuagguCCCUGCu -3'
miRNA:   3'- cGGAGCuaCGGAGC-CC--GCUu----GGGACG- -5'
18574 3' -58.5 NC_004682.1 + 32705 0.66 0.508835
Target:  5'- aGCUcUGccGCCUUGGccGCGAuguccgacgcGCCCUGCg -3'
miRNA:   3'- -CGGaGCuaCGGAGCC--CGCU----------UGGGACG- -5'
18574 3' -58.5 NC_004682.1 + 48652 0.67 0.498647
Target:  5'- gGCCUUGuggGCCUUGGGa--ACCCgUGUc -3'
miRNA:   3'- -CGGAGCua-CGGAGCCCgcuUGGG-ACG- -5'
18574 3' -58.5 NC_004682.1 + 6125 0.67 0.495608
Target:  5'- cGCUaCGcgGCCUaCGccaaggcguacgacGGCGGGCCgCUGCg -3'
miRNA:   3'- -CGGaGCuaCGGA-GC--------------CCGCUUGG-GACG- -5'
18574 3' -58.5 NC_004682.1 + 25588 0.67 0.458862
Target:  5'- gGCCUUGAcGCggUGGGCu-ACCUUGCc -3'
miRNA:   3'- -CGGAGCUaCGgaGCCCGcuUGGGACG- -5'
18574 3' -58.5 NC_004682.1 + 27833 0.67 0.458862
Target:  5'- aGCC-CGGUGCUUuccgaCGGGCGucACgUUGCg -3'
miRNA:   3'- -CGGaGCUACGGA-----GCCCGCu-UGgGACG- -5'
18574 3' -58.5 NC_004682.1 + 26242 0.67 0.446299
Target:  5'- aCCUCGGUGCCgUCcgcgagcuuccgguGGGUGAACUgCUGg -3'
miRNA:   3'- cGGAGCUACGG-AG--------------CCCGCUUGG-GACg -5'
18574 3' -58.5 NC_004682.1 + 4433 0.68 0.439613
Target:  5'- aGCCUUGGU-CCUCuaccgGGGCGAcaaggagcGCgCUGCu -3'
miRNA:   3'- -CGGAGCUAcGGAG-----CCCGCU--------UGgGACG- -5'
18574 3' -58.5 NC_004682.1 + 25787 0.68 0.4098
Target:  5'- aCCUCGGgguccggcuUGCCUCGuacuagcucgaaGCGGauGCCCUGCu -3'
miRNA:   3'- cGGAGCU---------ACGGAGCc-----------CGCU--UGGGACG- -5'
18574 3' -58.5 NC_004682.1 + 1852 0.68 0.402545
Target:  5'- -gCUCGGgcuccccgGCCccaUCGGGCcgcaaGGCCCUGCg -3'
miRNA:   3'- cgGAGCUa-------CGG---AGCCCGc----UUGGGACG- -5'
18574 3' -58.5 NC_004682.1 + 30767 0.68 0.393593
Target:  5'- aGCCggGAUGCCggugaUCGacauGCGAGCCgUGCg -3'
miRNA:   3'- -CGGagCUACGG-----AGCc---CGCUUGGgACG- -5'
18574 3' -58.5 NC_004682.1 + 16697 0.69 0.38477
Target:  5'- gGCCUgGAgGgCUCGGGuCGAuguCCCgGCu -3'
miRNA:   3'- -CGGAgCUaCgGAGCCC-GCUu--GGGaCG- -5'
18574 3' -58.5 NC_004682.1 + 48978 0.69 0.38477
Target:  5'- gGCCUUGcgGCCcgaUgGGGCcgggGAGCCCgaGCa -3'
miRNA:   3'- -CGGAGCuaCGG---AgCCCG----CUUGGGa-CG- -5'
18574 3' -58.5 NC_004682.1 + 48366 0.7 0.311441
Target:  5'- cCCUUGggGCCUUGGGCa---CCUGUg -3'
miRNA:   3'- cGGAGCuaCGGAGCCCGcuugGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.