miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18575 3' -54.9 NC_004682.1 + 36566 0.66 0.732911
Target:  5'- cCCUGCG-GCUUgcc--GCCGUCGGa- -3'
miRNA:   3'- -GGACGCaCGAGaaguaCGGUAGCCgc -5'
18575 3' -54.9 NC_004682.1 + 39898 0.66 0.721154
Target:  5'- gUCUGCacgucgaGUGC-CUUCAUGCCuUCaGCa -3'
miRNA:   3'- -GGACG-------CACGaGAAGUACGGuAGcCGc -5'
18575 3' -54.9 NC_004682.1 + 45852 0.66 0.72008
Target:  5'- cCCUGCG-GCUggaagccGCUGUCGGCGa -3'
miRNA:   3'- -GGACGCaCGAgaagua-CGGUAGCCGC- -5'
18575 3' -54.9 NC_004682.1 + 45241 0.66 0.689678
Target:  5'- uCCaGCGggcgauccGCUCUUCgAUGUgGUUGGCGc -3'
miRNA:   3'- -GGaCGCa-------CGAGAAG-UACGgUAGCCGC- -5'
18575 3' -54.9 NC_004682.1 + 45462 0.67 0.666574
Target:  5'- gCCcGUGUGCga--CGUGCCAugcgcugUCGGCGu -3'
miRNA:   3'- -GGaCGCACGagaaGUACGGU-------AGCCGC- -5'
18575 3' -54.9 NC_004682.1 + 25845 0.67 0.661048
Target:  5'- gCCUGCGccGCUCgUCcgggGUGCUggccuugguccacucGUCGGCGu -3'
miRNA:   3'- -GGACGCa-CGAGaAG----UACGG---------------UAGCCGC- -5'
18575 3' -54.9 NC_004682.1 + 17912 0.67 0.656622
Target:  5'- aCUGC-UGcCUCacgUCGUGUCGUUGGCu -3'
miRNA:   3'- gGACGcAC-GAGa--AGUACGGUAGCCGc -5'
18575 3' -54.9 NC_004682.1 + 43434 0.67 0.63445
Target:  5'- aUCUGCGgggGCUCg--AUGCCGuaggucUCGGCc -3'
miRNA:   3'- -GGACGCa--CGAGaagUACGGU------AGCCGc -5'
18575 3' -54.9 NC_004682.1 + 33778 0.67 0.623357
Target:  5'- cCCUGCaUGCcCgUCGUGagCAUCGGCa -3'
miRNA:   3'- -GGACGcACGaGaAGUACg-GUAGCCGc -5'
18575 3' -54.9 NC_004682.1 + 717 0.82 0.083747
Target:  5'- gCC-GCGUGCUCUUgGUGCCA-CGGCa -3'
miRNA:   3'- -GGaCGCACGAGAAgUACGGUaGCCGc -5'
18575 3' -54.9 NC_004682.1 + 32441 1.11 0.000681
Target:  5'- cCCUGCGUGCUCUUCAUGCCAUCGGCGa -3'
miRNA:   3'- -GGACGCACGAGAAGUACGGUAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.