miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18577 5' -61 NC_004682.1 + 50219 0.66 0.365294
Target:  5'- aGCCGguucauUCUGCCUgGcucuGugCGCUCCGCUc -3'
miRNA:   3'- -UGGU------AGACGGGgCc---UugGCGAGGCGA- -5'
18577 5' -61 NC_004682.1 + 20875 0.67 0.340692
Target:  5'- cCCGUucCUGCgCCCGGAGCUGCaguUCCccaaGCUg -3'
miRNA:   3'- uGGUA--GACG-GGGCCUUGGCG---AGG----CGA- -5'
18577 5' -61 NC_004682.1 + 36034 0.67 0.332762
Target:  5'- gACgAUCUGCgCCCGGuacaucuccgAACCGCccaugCCGUUg -3'
miRNA:   3'- -UGgUAGACG-GGGCC----------UUGGCGa----GGCGA- -5'
18577 5' -61 NC_004682.1 + 46399 0.68 0.309792
Target:  5'- cGCUccuuGUC-GCCCCGGuagagGACCaagGCUCCGCUc -3'
miRNA:   3'- -UGG----UAGaCGGGGCC-----UUGG---CGAGGCGA- -5'
18577 5' -61 NC_004682.1 + 48838 0.68 0.288049
Target:  5'- cGCCGUCgGCCUCGGGgggccaACCGCcgUCGUa -3'
miRNA:   3'- -UGGUAGaCGGGGCCU------UGGCGa-GGCGa -5'
18577 5' -61 NC_004682.1 + 35016 0.69 0.26095
Target:  5'- cUCGUCccauCCCCGGAACUGCUugCCGCc -3'
miRNA:   3'- uGGUAGac--GGGGCCUUGGCGA--GGCGa -5'
18577 5' -61 NC_004682.1 + 21968 0.69 0.235964
Target:  5'- cACCAUCaagGUgUCGGAcGCUGCUCCGUa -3'
miRNA:   3'- -UGGUAGa--CGgGGCCU-UGGCGAGGCGa -5'
18577 5' -61 NC_004682.1 + 15584 0.7 0.224241
Target:  5'- gACguUCggcggcacgGCCUCGGGGCCGCUgCCGUUg -3'
miRNA:   3'- -UGguAGa--------CGGGGCCUUGGCGA-GGCGA- -5'
18577 5' -61 NC_004682.1 + 26162 0.7 0.207587
Target:  5'- gACCAUCUGCCUCG---UCGCcCCGCa -3'
miRNA:   3'- -UGGUAGACGGGGCcuuGGCGaGGCGa -5'
18577 5' -61 NC_004682.1 + 26129 0.72 0.159612
Target:  5'- uGCCGUaCUGCUCCaGGAagaGCUGCUCCaGCa -3'
miRNA:   3'- -UGGUA-GACGGGG-CCU---UGGCGAGG-CGa -5'
18577 5' -61 NC_004682.1 + 33495 0.72 0.155407
Target:  5'- cGCCAgcggcCUGCUgCGGGGCCaGCUUCGCg -3'
miRNA:   3'- -UGGUa----GACGGgGCCUUGG-CGAGGCGa -5'
18577 5' -61 NC_004682.1 + 15348 0.73 0.125235
Target:  5'- cGCCGUCgUGCUCCGcAACgUGCUCCGCa -3'
miRNA:   3'- -UGGUAG-ACGGGGCcUUG-GCGAGGCGa -5'
18577 5' -61 NC_004682.1 + 28337 0.75 0.086832
Target:  5'- cGCCG-CUGUcguagucgcuaacuCCCGGAAUUGCUCCGCUa -3'
miRNA:   3'- -UGGUaGACG--------------GGGCCUUGGCGAGGCGA- -5'
18577 5' -61 NC_004682.1 + 30456 1.06 0.000384
Target:  5'- gACCAUCUGCCCCGGAACCGCUCCGCUc -3'
miRNA:   3'- -UGGUAGACGGGGCCUUGGCGAGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.