miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18651 5' -56.1 NC_004682.1 + 19361 0.66 0.651299
Target:  5'- gUCGuucAGGAUCUCGACaCCAaaGGUGAu -3'
miRNA:   3'- aAGC---UCUUAGAGCUGcGGUcgCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 29243 0.66 0.640236
Target:  5'- -gCGAGAcagC-CGugGaCGGCGGCGAu -3'
miRNA:   3'- aaGCUCUua-GaGCugCgGUCGCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 44811 0.66 0.629165
Target:  5'- -aCGGGGAguaCGugGCCaccGGCGGCGu -3'
miRNA:   3'- aaGCUCUUagaGCugCGG---UCGCCGCu -5'
18651 5' -56.1 NC_004682.1 + 43791 0.66 0.629165
Target:  5'- -gCGAGcGAUCUCGaACGCCGuUGGCa- -3'
miRNA:   3'- aaGCUC-UUAGAGC-UGCGGUcGCCGcu -5'
18651 5' -56.1 NC_004682.1 + 39972 0.66 0.629165
Target:  5'- -gCGAuGAAggcaCUCGACGUgcagaCGGCGGUGAu -3'
miRNA:   3'- aaGCU-CUUa---GAGCUGCG-----GUCGCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 4971 0.67 0.596009
Target:  5'- cUCGGGcGGUCUgGAuCGCCacAGCGGCu- -3'
miRNA:   3'- aAGCUC-UUAGAgCU-GCGG--UCGCCGcu -5'
18651 5' -56.1 NC_004682.1 + 11718 0.67 0.596009
Target:  5'- aUCGAGAAgacCUCGAuUGuCCAGCGGa-- -3'
miRNA:   3'- aAGCUCUUa--GAGCU-GC-GGUCGCCgcu -5'
18651 5' -56.1 NC_004682.1 + 31373 0.67 0.574044
Target:  5'- aUC-AGggUCUUGACGUUcuCGGCGAc -3'
miRNA:   3'- aAGcUCuuAGAGCUGCGGucGCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 21594 0.67 0.574043
Target:  5'- -cCGAGGA-CUUGAUGCCGGUGuaGGg -3'
miRNA:   3'- aaGCUCUUaGAGCUGCGGUCGCcgCU- -5'
18651 5' -56.1 NC_004682.1 + 40576 0.67 0.541477
Target:  5'- gUUGAcGAcCggGAUGCCGGCGGCGAu -3'
miRNA:   3'- aAGCUcUUaGagCUGCGGUCGCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 7961 0.68 0.530753
Target:  5'- --aGGGGAUCUCGGagaccggggUGUCAGCGGgGGc -3'
miRNA:   3'- aagCUCUUAGAGCU---------GCGGUCGCCgCU- -5'
18651 5' -56.1 NC_004682.1 + 21557 0.68 0.49908
Target:  5'- -aCGAGGccacugauacGUCcuUCGugGCgGGCGGUGAg -3'
miRNA:   3'- aaGCUCU----------UAG--AGCugCGgUCGCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 21611 0.69 0.468276
Target:  5'- -aCGAGGcgAUCUCGGCGgCGGUgaacaugggaGGCGAc -3'
miRNA:   3'- aaGCUCU--UAGAGCUGCgGUCG----------CCGCU- -5'
18651 5' -56.1 NC_004682.1 + 41810 0.69 0.458225
Target:  5'- gUCGGGA--CUCG-CGCCAGCaGCGc -3'
miRNA:   3'- aAGCUCUuaGAGCuGCGGUCGcCGCu -5'
18651 5' -56.1 NC_004682.1 + 5324 0.69 0.438477
Target:  5'- gUCGucGGA-CUCGugGCCGGUcugGGCGAu -3'
miRNA:   3'- aAGCu-CUUaGAGCugCGGUCG---CCGCU- -5'
18651 5' -56.1 NC_004682.1 + 43726 0.69 0.438477
Target:  5'- gUUCGAGAucgCUCG-CGCCgucguAGCGGCc- -3'
miRNA:   3'- -AAGCUCUua-GAGCuGCGG-----UCGCCGcu -5'
18651 5' -56.1 NC_004682.1 + 15462 0.7 0.376959
Target:  5'- --aGAGGAcgacCUCGACGCCAGUgagauggaagcgaugGGCGAc -3'
miRNA:   3'- aagCUCUUa---GAGCUGCGGUCG---------------CCGCU- -5'
18651 5' -56.1 NC_004682.1 + 16159 0.71 0.347618
Target:  5'- aUCGAGAAg-UCGAUGC--GCGGCGAg -3'
miRNA:   3'- aAGCUCUUagAGCUGCGguCGCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 37216 0.73 0.256779
Target:  5'- -cUGGGGAUCUCGuCGCacacguucggcuaCGGCGGCGAc -3'
miRNA:   3'- aaGCUCUUAGAGCuGCG-------------GUCGCCGCU- -5'
18651 5' -56.1 NC_004682.1 + 26090 0.74 0.238115
Target:  5'- -gCGGGAGUC-CGACGCCGGCcucaucGCGAc -3'
miRNA:   3'- aaGCUCUUAGaGCUGCGGUCGc-----CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.