miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18662 3' -55.4 NC_004682.1 + 39720 0.66 0.689678
Target:  5'- --cAUCACCUGGgGUcucgGGGCAUggGCGUa -3'
miRNA:   3'- gucUAGUGGACCgCG----CUCGUGa-UGCG- -5'
18662 3' -55.4 NC_004682.1 + 24961 0.66 0.667678
Target:  5'- -uGGUgUACCUGaaCGCGGGCgACUACGUg -3'
miRNA:   3'- guCUA-GUGGACc-GCGCUCG-UGAUGCG- -5'
18662 3' -55.4 NC_004682.1 + 14208 0.66 0.656622
Target:  5'- aGGAUCgggaggacgacgGCCUGGaCGCGGGgCAuCUGgGCc -3'
miRNA:   3'- gUCUAG------------UGGACC-GCGCUC-GU-GAUgCG- -5'
18662 3' -55.4 NC_004682.1 + 34684 0.66 0.645543
Target:  5'- uGGGcCACCUcGGCGUGgcgucguuccuGGCGCUGUGCg -3'
miRNA:   3'- gUCUaGUGGA-CCGCGC-----------UCGUGAUGCG- -5'
18662 3' -55.4 NC_004682.1 + 36777 0.67 0.63445
Target:  5'- cCAGAUCGCCagccaGGaGCGGacGgACUACGCc -3'
miRNA:   3'- -GUCUAGUGGa----CCgCGCU--CgUGAUGCG- -5'
18662 3' -55.4 NC_004682.1 + 35845 0.67 0.623357
Target:  5'- gGGA--ACCUGGCGCugguggacGAGCGCUAUc- -3'
miRNA:   3'- gUCUagUGGACCGCG--------CUCGUGAUGcg -5'
18662 3' -55.4 NC_004682.1 + 9034 0.67 0.623357
Target:  5'- cCGGAagcccUCAagcuCCUGGCGCGcuGCGaugGCGCg -3'
miRNA:   3'- -GUCU-----AGU----GGACCGCGCu-CGUga-UGCG- -5'
18662 3' -55.4 NC_004682.1 + 2948 0.67 0.623357
Target:  5'- -uGAUCgACUucuggGGCGCGGGCgGCgGCGCu -3'
miRNA:   3'- guCUAG-UGGa----CCGCGCUCG-UGaUGCG- -5'
18662 3' -55.4 NC_004682.1 + 6494 0.67 0.612271
Target:  5'- gAGGUCaACCUGGCGgGcuacucGCAagGCGCg -3'
miRNA:   3'- gUCUAG-UGGACCGCgCu-----CGUgaUGCG- -5'
18662 3' -55.4 NC_004682.1 + 7749 0.67 0.601202
Target:  5'- --cGUCGCCUGGCGaucuGCAacGCGCa -3'
miRNA:   3'- gucUAGUGGACCGCgcu-CGUgaUGCG- -5'
18662 3' -55.4 NC_004682.1 + 23255 0.67 0.601202
Target:  5'- -cGGUgGCCU-GCGCGAGgaGCUGCGg -3'
miRNA:   3'- guCUAgUGGAcCGCGCUCg-UGAUGCg -5'
18662 3' -55.4 NC_004682.1 + 30145 0.67 0.59016
Target:  5'- -cGAUCuCCUGaGCGCcc-CACUGCGCc -3'
miRNA:   3'- guCUAGuGGAC-CGCGcucGUGAUGCG- -5'
18662 3' -55.4 NC_004682.1 + 16477 0.68 0.579154
Target:  5'- gAGAUgCGCCgacgaGGCGCGA--ACUACGUc -3'
miRNA:   3'- gUCUA-GUGGa----CCGCGCUcgUGAUGCG- -5'
18662 3' -55.4 NC_004682.1 + 13640 0.68 0.557284
Target:  5'- gAGAUCGagUGGCGUGgAGUGCgguggGCGCu -3'
miRNA:   3'- gUCUAGUggACCGCGC-UCGUGa----UGCG- -5'
18662 3' -55.4 NC_004682.1 + 12748 0.68 0.524953
Target:  5'- -uGAUCGCCcuUGGCauauGgGAGCGCgcugACGCc -3'
miRNA:   3'- guCUAGUGG--ACCG----CgCUCGUGa---UGCG- -5'
18662 3' -55.4 NC_004682.1 + 3211 0.68 0.524953
Target:  5'- aCGGcAUCACCUacgucggcGGCGCG-GCACaGgGCg -3'
miRNA:   3'- -GUC-UAGUGGA--------CCGCGCuCGUGaUgCG- -5'
18662 3' -55.4 NC_004682.1 + 4349 0.69 0.483021
Target:  5'- gCAGAagCGCCUGG-GCGAucaGCUugGCg -3'
miRNA:   3'- -GUCUa-GUGGACCgCGCUcg-UGAugCG- -5'
18662 3' -55.4 NC_004682.1 + 34296 0.7 0.462665
Target:  5'- --cGUCGCCgaGGUGauCGAGCACUACGg -3'
miRNA:   3'- gucUAGUGGa-CCGC--GCUCGUGAUGCg -5'
18662 3' -55.4 NC_004682.1 + 34230 0.7 0.442769
Target:  5'- -cGAUCACCUcGGCGaCGAGgGugucCUGCGUc -3'
miRNA:   3'- guCUAGUGGA-CCGC-GCUCgU----GAUGCG- -5'
18662 3' -55.4 NC_004682.1 + 3127 0.7 0.423365
Target:  5'- aCGGGUCGaucaCUGGCGCaGGCG--GCGCa -3'
miRNA:   3'- -GUCUAGUg---GACCGCGcUCGUgaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.