miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 3' -55.2 NC_004684.1 + 57535 0.66 0.815853
Target:  5'- gGGAUCcGG-CGGCagcucaCCGgcgGCGGUGAu -3'
miRNA:   3'- -CCUAGuCCaGCUGc-----GGCaa-CGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 34848 0.66 0.805745
Target:  5'- ---cCAGGUcaucgccCGGCGCgaaCGUUGUGGUGGc -3'
miRNA:   3'- ccuaGUCCA-------GCUGCG---GCAACGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 23710 0.66 0.797319
Target:  5'- cGGuGUCGGaccUCGACGCCG-UGUGGgcUGAg -3'
miRNA:   3'- -CC-UAGUCc--AGCUGCGGCaACGCC--ACU- -5'
19044 3' -55.2 NC_004684.1 + 45763 0.66 0.787801
Target:  5'- aGGuUCuuGGUC-ACGCCGgUGCGGUa- -3'
miRNA:   3'- -CCuAGu-CCAGcUGCGGCaACGCCAcu -5'
19044 3' -55.2 NC_004684.1 + 42166 0.67 0.748293
Target:  5'- ----uGGGUCGagaGCGCCGcacugcGCGGUGAg -3'
miRNA:   3'- ccuagUCCAGC---UGCGGCaa----CGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 55405 0.67 0.748293
Target:  5'- gGGGUCAugccGUCGGugcCGCCGgucGCGGUGu -3'
miRNA:   3'- -CCUAGUc---CAGCU---GCGGCaa-CGCCACu -5'
19044 3' -55.2 NC_004684.1 + 38493 0.67 0.747279
Target:  5'- cGAUCAgcggcGGUCGccacggcGCGCCGUU-CGGUGu -3'
miRNA:   3'- cCUAGU-----CCAGC-------UGCGGCAAcGCCACu -5'
19044 3' -55.2 NC_004684.1 + 67194 0.67 0.738109
Target:  5'- cGGGUCAcGGUCu-CGCCGUUcggcaggucaaCGGUGAa -3'
miRNA:   3'- -CCUAGU-CCAGcuGCGGCAAc----------GCCACU- -5'
19044 3' -55.2 NC_004684.1 + 45445 0.67 0.72472
Target:  5'- aGGcGUCAauGUCGACGCCGagguugaugcucccgGCGGUGGu -3'
miRNA:   3'- -CC-UAGUc-CAGCUGCGGCaa-------------CGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 65868 0.67 0.717448
Target:  5'- cGGGUCGcGUCGuCGCCGUUgagcGCGGc-- -3'
miRNA:   3'- -CCUAGUcCAGCuGCGGCAA----CGCCacu -5'
19044 3' -55.2 NC_004684.1 + 29491 0.67 0.717448
Target:  5'- -cAUCAGGuugUCGAUGCCGUUGU--UGAg -3'
miRNA:   3'- ccUAGUCC---AGCUGCGGCAACGccACU- -5'
19044 3' -55.2 NC_004684.1 + 20985 0.68 0.706991
Target:  5'- cGGcgCAGGUCGGC-CCGauccUGCGGc-- -3'
miRNA:   3'- -CCuaGUCCAGCUGcGGCa---ACGCCacu -5'
19044 3' -55.2 NC_004684.1 + 48043 0.69 0.653871
Target:  5'- cGAUCAGG-CGGCGCa--UGCGGaUGGc -3'
miRNA:   3'- cCUAGUCCaGCUGCGgcaACGCC-ACU- -5'
19044 3' -55.2 NC_004684.1 + 64966 0.69 0.643151
Target:  5'- cGGuUCAGGUCGAUGaCCGcgacGCGGg-- -3'
miRNA:   3'- -CCuAGUCCAGCUGC-GGCaa--CGCCacu -5'
19044 3' -55.2 NC_004684.1 + 58566 0.69 0.63242
Target:  5'- -aGUCGGGcgaUGGCGUCGUUGCGGg-- -3'
miRNA:   3'- ccUAGUCCa--GCUGCGGCAACGCCacu -5'
19044 3' -55.2 NC_004684.1 + 66723 0.69 0.621689
Target:  5'- aGGAUCAGG-CGcACGCUGUcgUGCGcGUcGGu -3'
miRNA:   3'- -CCUAGUCCaGC-UGCGGCA--ACGC-CA-CU- -5'
19044 3' -55.2 NC_004684.1 + 16783 0.7 0.557784
Target:  5'- gGGAcCAGGUgCGGCG-CGUcgUGUGGUGGg -3'
miRNA:   3'- -CCUaGUCCA-GCUGCgGCA--ACGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 62333 0.7 0.557784
Target:  5'- uGGAUCAGGaUCGugggaGCGCCGggUGCcagacgcguGGUGGc -3'
miRNA:   3'- -CCUAGUCC-AGC-----UGCGGCa-ACG---------CCACU- -5'
19044 3' -55.2 NC_004684.1 + 6845 0.7 0.557784
Target:  5'- cGGcgCgaAGGgCGACGCCGUgGUGGUGc -3'
miRNA:   3'- -CCuaG--UCCaGCUGCGGCAaCGCCACu -5'
19044 3' -55.2 NC_004684.1 + 53803 0.71 0.52649
Target:  5'- gGGAUCGGGUUG-CGCCuccaUGCGGg-- -3'
miRNA:   3'- -CCUAGUCCAGCuGCGGca--ACGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.