miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 39806 0.66 0.853338
Target:  5'- --uGCGCCgGUccAUGUCGGacagguGCUUGGCCa -3'
miRNA:   3'- guuCGCGGaCA--UGUAGCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 60970 0.66 0.853338
Target:  5'- --cGUGgCUGgugGCGUCGGcCUCGGUg -3'
miRNA:   3'- guuCGCgGACa--UGUAGCCuGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 53680 0.66 0.853338
Target:  5'- -cAGCGCCUGg--GUCGGGaugaucUUCGGCg -3'
miRNA:   3'- guUCGCGGACaugUAGCCU------GAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 43968 0.66 0.853338
Target:  5'- cCGAGCaucaGCC-GUGCG-CGGGCguaccCGGCCa -3'
miRNA:   3'- -GUUCG----CGGaCAUGUaGCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 13063 0.66 0.844803
Target:  5'- --cGCG-CUGUGCuaugcccUCGGAaugUCAGCCg -3'
miRNA:   3'- guuCGCgGACAUGu------AGCCUg--AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 54527 0.66 0.844803
Target:  5'- -cGGCgGCCUcgGCGguggCGGcCUCGGCCu -3'
miRNA:   3'- guUCG-CGGAcaUGUa---GCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 49650 0.66 0.844803
Target:  5'- gGAGCaCCgaccACGgcgUGGACUCGGCCc -3'
miRNA:   3'- gUUCGcGGaca-UGUa--GCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 4892 0.66 0.844803
Target:  5'- uCAGGCgGCCUGgucgcCAcCGGcCUCGGCg -3'
miRNA:   3'- -GUUCG-CGGACau---GUaGCCuGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 61693 0.66 0.836045
Target:  5'- -uGGCGUCgGUGCcgUGGGCa-GGCCg -3'
miRNA:   3'- guUCGCGGaCAUGuaGCCUGagUCGG- -5'
19049 3' -53.7 NC_004684.1 + 20739 0.66 0.836045
Target:  5'- gGAGCGCCUGgagGCAccgCaGGCgguGCCg -3'
miRNA:   3'- gUUCGCGGACa--UGUa--GcCUGaguCGG- -5'
19049 3' -53.7 NC_004684.1 + 64447 0.66 0.827072
Target:  5'- --cGCGCCgaugGCcUCGGuGCUCGGCa -3'
miRNA:   3'- guuCGCGGaca-UGuAGCC-UGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 8680 0.66 0.827072
Target:  5'- cCAGGUGCCUGUggccguGCGUgaGGuCUguUAGCCg -3'
miRNA:   3'- -GUUCGCGGACA------UGUAg-CCuGA--GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 9464 0.66 0.827072
Target:  5'- cCGGGCGCUgGaGCuggCGGGCaagcgCAGCCg -3'
miRNA:   3'- -GUUCGCGGaCaUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 32278 0.66 0.827072
Target:  5'- -cGGCGaagagGUGCAUUGGcGCUCGGCg -3'
miRNA:   3'- guUCGCgga--CAUGUAGCC-UGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 15738 0.66 0.827072
Target:  5'- gCAAGgGCCUcGUGCA-CGGcCagCAGCUg -3'
miRNA:   3'- -GUUCgCGGA-CAUGUaGCCuGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 49101 0.66 0.817895
Target:  5'- gCAGGUGCCacagGUcgcCGUCGGcgUCGGCCu -3'
miRNA:   3'- -GUUCGCGGa---CAu--GUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 41266 0.66 0.817895
Target:  5'- gAGGUGCUgGUGCgGUCGGACagcGCCg -3'
miRNA:   3'- gUUCGCGGaCAUG-UAGCCUGaguCGG- -5'
19049 3' -53.7 NC_004684.1 + 36773 0.67 0.798965
Target:  5'- --cGCGCCcgGUGCcgacgcugGUCGGcggcgGCUCGGUCa -3'
miRNA:   3'- guuCGCGGa-CAUG--------UAGCC-----UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 26286 0.67 0.798965
Target:  5'- -cGGUGaCCUcGgcCAUCGGuacgcaGCUCGGCCa -3'
miRNA:   3'- guUCGC-GGA-CauGUAGCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 4229 0.67 0.798965
Target:  5'- gCAuGCGCCUGcGCGgcgcgcaGGAgccgcaCUCGGCCa -3'
miRNA:   3'- -GUuCGCGGACaUGUag-----CCU------GAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.