Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 12490 | 0.66 | 0.637056 |
Target: 5'- -cGGCCAccagGGcCGCCUcGUGCCGCAc--- -3' miRNA: 3'- uaCCGGU----UC-GUGGA-CACGGUGUaccu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 25195 | 0.66 | 0.637055 |
Target: 5'- uUGGCCAGGCGCUggcaCCGgGUGGc -3' miRNA: 3'- uACCGGUUCGUGGacacGGUgUACCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 50544 | 0.66 | 0.637055 |
Target: 5'- cAUGGCUGAGUugGCCUuucGUGgUugGUGGAg -3' miRNA: 3'- -UACCGGUUCG--UGGA---CACgGugUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 39145 | 0.66 | 0.626037 |
Target: 5'- cUGGCCGGGUccaccGCgCUGUGCUccGgGUGGGc -3' miRNA: 3'- uACCGGUUCG-----UG-GACACGG--UgUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 27629 | 0.66 | 0.626037 |
Target: 5'- -cGGCCAGGaCGCCa-UGCCACccGGu -3' miRNA: 3'- uaCCGGUUC-GUGGacACGGUGuaCCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 283 | 0.66 | 0.626037 |
Target: 5'- cAUGGCC-AGUACaaaccgauCUGUGCCAaCAUcGGGa -3' miRNA: 3'- -UACCGGuUCGUG--------GACACGGU-GUA-CCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 15682 | 0.66 | 0.626037 |
Target: 5'- cGUGGCCAgcggcGGCACCgacGCCACcgGc- -3' miRNA: 3'- -UACCGGU-----UCGUGGacaCGGUGuaCcu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 36910 | 0.66 | 0.626037 |
Target: 5'- cUGGCCGguGGCAUCgcccgGUcgagGCCGgGUGGAc -3' miRNA: 3'- uACCGGU--UCGUGGa----CA----CGGUgUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 4114 | 0.66 | 0.615024 |
Target: 5'- -aGGCCAacuGGCcaaGCCUGUaCCugAUGGu -3' miRNA: 3'- uaCCGGU---UCG---UGGACAcGGugUACCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 16222 | 0.66 | 0.604026 |
Target: 5'- cAUGGCCcGGCGCaucgGCCACAccgaGGAg -3' miRNA: 3'- -UACCGGuUCGUGgacaCGGUGUa---CCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 22057 | 0.66 | 0.604026 |
Target: 5'- -aGcGCCAGGCACaguCUG-GCUACcgGGAc -3' miRNA: 3'- uaC-CGGUUCGUG---GACaCGGUGuaCCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 46116 | 0.66 | 0.604026 |
Target: 5'- -cGGCCGGGCGCgC-GUGCCgGgGUGGu -3' miRNA: 3'- uaCCGGUUCGUG-GaCACGG-UgUACCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 3389 | 0.66 | 0.602927 |
Target: 5'- -cGG-CAAGCGCCUGgagaccGCCGCcaaggugAUGGAg -3' miRNA: 3'- uaCCgGUUCGUGGACa-----CGGUG-------UACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 29763 | 0.67 | 0.582111 |
Target: 5'- cAUGGCCAGcGCACCgacggcGUuCgGCAUGGGc -3' miRNA: 3'- -UACCGGUU-CGUGGa-----CAcGgUGUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 36230 | 0.67 | 0.582111 |
Target: 5'- cUGGCCcAGCACC---GCCGCcgGGu -3' miRNA: 3'- uACCGGuUCGUGGacaCGGUGuaCCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 16470 | 0.67 | 0.571212 |
Target: 5'- -aGGCCGGGCuguCCg--GCCACGUGc- -3' miRNA: 3'- uaCCGGUUCGu--GGacaCGGUGUACcu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 57306 | 0.67 | 0.571212 |
Target: 5'- uGUGGCUGAGCACCcGgcgcaCCACggGGGu -3' miRNA: 3'- -UACCGGUUCGUGGaCac---GGUGuaCCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 9893 | 0.67 | 0.560363 |
Target: 5'- -cGGCgCAGGCACCUgcGUGCgGCgcuugucgacgGUGGGc -3' miRNA: 3'- uaCCG-GUUCGUGGA--CACGgUG-----------UACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 36317 | 0.67 | 0.560362 |
Target: 5'- gGUGGaCCAAcaacuCGCCgGUGCCGCAgUGGGu -3' miRNA: 3'- -UACC-GGUUc----GUGGaCACGGUGU-ACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 62503 | 0.67 | 0.549571 |
Target: 5'- gGUGGCgacCAGGcCGCCUGaGCCGCcuucaAUGGAc -3' miRNA: 3'- -UACCG---GUUC-GUGGACaCGGUG-----UACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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