miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 3' -54.1 NC_004684.1 + 29935 0.65 0.858745
Target:  5'- aGCUgcCAGCGUGaagGUGUCGGUcaccuccGGUGCc -3'
miRNA:   3'- gCGGa-GUUGCAU---UACAGCCA-------CCGCGc -5'
19068 3' -54.1 NC_004684.1 + 63546 0.66 0.8513
Target:  5'- uGCCuUCggUGUGGUcGUCGGUcGGCaCGc -3'
miRNA:   3'- gCGG-AGuuGCAUUA-CAGCCA-CCGcGC- -5'
19068 3' -54.1 NC_004684.1 + 4791 0.66 0.842816
Target:  5'- gCGCCUCGGCG------CGGUGGC-CGa -3'
miRNA:   3'- -GCGGAGUUGCauuacaGCCACCGcGC- -5'
19068 3' -54.1 NC_004684.1 + 61176 0.66 0.834116
Target:  5'- gGCCaggUCGGCGgg--GUUGGUGGCcucgGCGu -3'
miRNA:   3'- gCGG---AGUUGCauuaCAGCCACCG----CGC- -5'
19068 3' -54.1 NC_004684.1 + 43106 0.66 0.834116
Target:  5'- uCGCCUuccggCAGCucgGUGAUuUCGGUGGCGa- -3'
miRNA:   3'- -GCGGA-----GUUG---CAUUAcAGCCACCGCgc -5'
19068 3' -54.1 NC_004684.1 + 64799 0.66 0.825209
Target:  5'- cCGCgUCGGCGUAcucgGUCGGgucgGGCa-- -3'
miRNA:   3'- -GCGgAGUUGCAUua--CAGCCa---CCGcgc -5'
19068 3' -54.1 NC_004684.1 + 44408 0.66 0.825209
Target:  5'- gGCCguugaUCAGCGguucGAUGgCGGcguUGGCGCGc -3'
miRNA:   3'- gCGG-----AGUUGCa---UUACaGCC---ACCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 43431 0.66 0.816104
Target:  5'- gGCC-CGGCGaggccgagGUCGGUgcggcgGGCGCGg -3'
miRNA:   3'- gCGGaGUUGCauua----CAGCCA------CCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 40331 0.66 0.816104
Target:  5'- aCGaCCUCGGCGcUGGgcagGUCGcUGGCgGCGg -3'
miRNA:   3'- -GC-GGAGUUGC-AUUa---CAGCcACCG-CGC- -5'
19068 3' -54.1 NC_004684.1 + 48937 0.66 0.815182
Target:  5'- gGCCUCGucgccgaACGgcAcGUCGGcgGGCGgGg -3'
miRNA:   3'- gCGGAGU-------UGCauUaCAGCCa-CCGCgC- -5'
19068 3' -54.1 NC_004684.1 + 55781 0.66 0.815182
Target:  5'- aGCCUucgauggCGGCGUGAccgggugGUcCGGUGaGCGCGu -3'
miRNA:   3'- gCGGA-------GUUGCAUUa------CA-GCCAC-CGCGC- -5'
19068 3' -54.1 NC_004684.1 + 60221 0.67 0.80681
Target:  5'- gGCCUCGGCGUuguaGGUGcacccgcaggCGGUGGC-Ca -3'
miRNA:   3'- gCGGAGUUGCA----UUACa---------GCCACCGcGc -5'
19068 3' -54.1 NC_004684.1 + 53508 0.67 0.80587
Target:  5'- uCGCCUUggUGUcgacacccuccugAAUGgccaGGUcGGCGCGg -3'
miRNA:   3'- -GCGGAGuuGCA-------------UUACag--CCA-CCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 17593 0.67 0.787697
Target:  5'- cCGCUggAAUcUAGUGUCuGUGGUGCGg -3'
miRNA:   3'- -GCGGagUUGcAUUACAGcCACCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 15291 0.67 0.787697
Target:  5'- aGCC-CGACGU----UUGGcUGGCGCGa -3'
miRNA:   3'- gCGGaGUUGCAuuacAGCC-ACCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 41258 0.67 0.787697
Target:  5'- gGCCUcCAGC-UGGUGU-GGUGGgGCa -3'
miRNA:   3'- gCGGA-GUUGcAUUACAgCCACCgCGc -5'
19068 3' -54.1 NC_004684.1 + 25547 0.67 0.777898
Target:  5'- aCGCCgaggaacGCGUAcgcGUCGGUGGCcaGCGc -3'
miRNA:   3'- -GCGGagu----UGCAUua-CAGCCACCG--CGC- -5'
19068 3' -54.1 NC_004684.1 + 58885 0.67 0.767952
Target:  5'- gGCgUUGGCGaUGGUcUUGGUGGUGCGg -3'
miRNA:   3'- gCGgAGUUGC-AUUAcAGCCACCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 33876 0.67 0.767952
Target:  5'- gGCCUaccaGGCGgugcgggcGGUGcCGGUGGgCGCGg -3'
miRNA:   3'- gCGGAg---UUGCa-------UUACaGCCACC-GCGC- -5'
19068 3' -54.1 NC_004684.1 + 64636 0.67 0.76695
Target:  5'- uGCCgUCGGCGUcguggcgcaccgcGAUGUCGGc-GCGCa -3'
miRNA:   3'- gCGG-AGUUGCA-------------UUACAGCCacCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.