Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19071 | 3' | -56.4 | NC_004684.1 | + | 16413 | 0.66 | 0.731074 |
Target: 5'- aCAUCUgccaggGGUCGgccuacgacguGCUGGCGCAC-ACCa -3' miRNA: 3'- -GUAGGa-----CCGGC-----------UGACUGCGUGaUGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 23635 | 0.66 | 0.731074 |
Target: 5'- uGUCCcGGCCuuGCUGGCacCGCUGCUGa -3' miRNA: 3'- gUAGGaCCGGc-UGACUGc-GUGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 56680 | 0.66 | 0.731074 |
Target: 5'- --gCCUGGCgGuGCUGGCGCAgaaGCUGg -3' miRNA: 3'- guaGGACCGgC-UGACUGCGUga-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 56355 | 0.66 | 0.710233 |
Target: 5'- gCGUCCUccaccacGCCGA-UGACGUaACUGCCGc -3' miRNA: 3'- -GUAGGAc------CGGCUgACUGCG-UGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 22112 | 0.66 | 0.710233 |
Target: 5'- -uUCCUguGGCCGGaaaccgGACGCAaggGCCGc -3' miRNA: 3'- guAGGA--CCGGCUga----CUGCGUga-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 9710 | 0.66 | 0.710233 |
Target: 5'- cCAUgCCUGGCCGA-UGGC-CACcUGCUGu -3' miRNA: 3'- -GUA-GGACCGGCUgACUGcGUG-AUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 23712 | 0.66 | 0.698641 |
Target: 5'- --aCCUGGgCGGC-GGCGCGCUcaacaucGCUGg -3' miRNA: 3'- guaGGACCgGCUGaCUGCGUGA-------UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 22164 | 0.66 | 0.698641 |
Target: 5'- --gCCUGaccagcaccaagcGCCGcAUgGACGCGCUGCCGc -3' miRNA: 3'- guaGGAC-------------CGGC-UGaCUGCGUGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 36929 | 0.66 | 0.6891 |
Target: 5'- gGUCgaGGCCGGgUGgacACGC-CUGCUGg -3' miRNA: 3'- gUAGgaCCGGCUgAC---UGCGuGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 36078 | 0.66 | 0.6891 |
Target: 5'- aCGUCCUGGCUGGuCUGccCGguC-ACCGa -3' miRNA: 3'- -GUAGGACCGGCU-GACu-GCguGaUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 63181 | 0.66 | 0.6891 |
Target: 5'- --gCCgGGUCGACUcGACGCG--GCCGa -3' miRNA: 3'- guaGGaCCGGCUGA-CUGCGUgaUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 13460 | 0.67 | 0.667757 |
Target: 5'- --gCCUGGCCGACacggUGAcccCGCACcucGCCu -3' miRNA: 3'- guaGGACCGGCUG----ACU---GCGUGa--UGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 37691 | 0.67 | 0.667757 |
Target: 5'- gGUUCUGGCCcacGACguUGACGCGCgcacGCgCGg -3' miRNA: 3'- gUAGGACCGG---CUG--ACUGCGUGa---UG-GC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 3076 | 0.67 | 0.661326 |
Target: 5'- --aCCUGGCgguguucaaccaccaCGACggccagGGCGCACUGCgCGc -3' miRNA: 3'- guaGGACCG---------------GCUGa-----CUGCGUGAUG-GC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 32751 | 0.67 | 0.661326 |
Target: 5'- aCGUCgC-GGCCGACcuggUGGCGUgagcaugaccgggugGCUGCCGg -3' miRNA: 3'- -GUAG-GaCCGGCUG----ACUGCG---------------UGAUGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 41905 | 0.67 | 0.657033 |
Target: 5'- ---gCUGGCCGACcgGACGaCAUcgugGCCGu -3' miRNA: 3'- guagGACCGGCUGa-CUGC-GUGa---UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 65615 | 0.67 | 0.657033 |
Target: 5'- gCGUCCUGGuuGGCguccagccACGCGCgcagcuCCGg -3' miRNA: 3'- -GUAGGACCggCUGac------UGCGUGau----GGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 1375 | 0.67 | 0.645211 |
Target: 5'- aCAcCCUGGCCGACgccaaGGCcgccguuGCACUgGCCa -3' miRNA: 3'- -GUaGGACCGGCUGa----CUG-------CGUGA-UGGc -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 7701 | 0.67 | 0.635528 |
Target: 5'- -uUCCaGGCCGucGCcGugGCGCUgGCCGu -3' miRNA: 3'- guAGGaCCGGC--UGaCugCGUGA-UGGC- -5' |
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19071 | 3' | -56.4 | NC_004684.1 | + | 17070 | 0.67 | 0.635528 |
Target: 5'- cCcgCCUGGCCG---GGCGCACcgACUGg -3' miRNA: 3'- -GuaGGACCGGCugaCUGCGUGa-UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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