miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 5' -67.3 NC_004684.1 + 21253 0.65 0.265911
Target:  5'- aGGgCACCaucGGCCugGGCgaugugauccagaaGGUCAGCu -3'
miRNA:   3'- gCCgGUGGc--CCGGugCCG--------------CCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 11962 0.66 0.238149
Target:  5'- uGGCacCugCGGcGCCACcGCGaCCGGCGg -3'
miRNA:   3'- gCCG--GugGCC-CGGUGcCGCcGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 12880 0.66 0.243845
Target:  5'- aGGCCGCCgccggGGaGCCuGCGcucGCcGCCAGCGg -3'
miRNA:   3'- gCCGGUGG-----CC-CGG-UGC---CGcCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 64710 0.66 0.243845
Target:  5'- gCGGCCGCCaGGGCCuccauCGGguccaucuugUGGCCGaccuGCu -3'
miRNA:   3'- -GCCGGUGG-CCCGGu----GCC----------GCCGGU----CGc -5'
19092 5' -67.3 NC_004684.1 + 15864 0.66 0.243845
Target:  5'- aGGUCAUCGaGCaCGUGGCcGCCAGCGg -3'
miRNA:   3'- gCCGGUGGCcCG-GUGCCGcCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 33822 0.66 0.238149
Target:  5'- uCGGCgGgCGGuguGCC-CGGCGG-CGGCGg -3'
miRNA:   3'- -GCCGgUgGCC---CGGuGCCGCCgGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 9121 0.66 0.232564
Target:  5'- gGGCCaucaccGCCGaGGCCAUGGUcaagaugcucGGCCuGGCc -3'
miRNA:   3'- gCCGG------UGGC-CCGGUGCCG----------CCGG-UCGc -5'
19092 5' -67.3 NC_004684.1 + 42412 0.66 0.240414
Target:  5'- aCGcGCCgACgCGGGCCAagguaugggcaggacUGGCGGUCAucGCGc -3'
miRNA:   3'- -GC-CGG-UG-GCCCGGU---------------GCCGCCGGU--CGC- -5'
19092 5' -67.3 NC_004684.1 + 66479 0.66 0.232564
Target:  5'- -cGCCACCcGGUgGCGGCuaGGCCuuGGCGn -3'
miRNA:   3'- gcCGGUGGcCCGgUGCCG--CCGG--UCGC- -5'
19092 5' -67.3 NC_004684.1 + 24853 0.66 0.238149
Target:  5'- aGcGCCACCGGGCCGuuCGGCacccccaucaaGCC-GCGc -3'
miRNA:   3'- gC-CGGUGGCCCGGU--GCCGc----------CGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 21065 0.66 0.232564
Target:  5'- cCGGUgcugACCGGGCacCugGGcCGGUCAGUGc -3'
miRNA:   3'- -GCCGg---UGGCCCG--GugCC-GCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 30477 0.66 0.249069
Target:  5'- uGGCaCGCUcGGCUAUgacccgagcguggGGCGGCUGGCGc -3'
miRNA:   3'- gCCG-GUGGcCCGGUG-------------CCGCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 19565 0.66 0.246155
Target:  5'- aGGUCuCCGGGCC-UGGCGucgugcaccugcccaGuCCGGCGg -3'
miRNA:   3'- gCCGGuGGCCCGGuGCCGC---------------C-GGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 14503 0.66 0.238149
Target:  5'- cCGGUCGCCGGuGgCACGGUGa-CGGUGa -3'
miRNA:   3'- -GCCGGUGGCC-CgGUGCCGCcgGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 3480 0.66 0.232564
Target:  5'- -aGCCacGCCGGGCCGCaccGUGGCC-GCc -3'
miRNA:   3'- gcCGG--UGGCCCGGUGc--CGCCGGuCGc -5'
19092 5' -67.3 NC_004684.1 + 56035 0.66 0.232564
Target:  5'- uGGCCACCaccguGGGCCuggaGGCcGCCgucaaGGCGc -3'
miRNA:   3'- gCCGGUGG-----CCCGGug--CCGcCGG-----UCGC- -5'
19092 5' -67.3 NC_004684.1 + 33456 0.66 0.232012
Target:  5'- uGGCuCGCUGuGGUCugccucgGCGGCGGCU-GCGg -3'
miRNA:   3'- gCCG-GUGGC-CCGG-------UGCCGCCGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 44415 0.66 0.23146
Target:  5'- aCGGCCACCucguuggcguccGGCC-CGGUGGCgUAGuCGa -3'
miRNA:   3'- -GCCGGUGGc-----------CCGGuGCCGCCG-GUC-GC- -5'
19092 5' -67.3 NC_004684.1 + 1849 0.66 0.243845
Target:  5'- gCGGaccaaCGCCGGGCCGCauauccaccuGGCcgaaGGauCCAGCGa -3'
miRNA:   3'- -GCCg----GUGGCCCGGUG----------CCG----CC--GGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 25876 0.66 0.243845
Target:  5'- uCGGCCagGCCGGGCagaACGucaGCGGugaccugcuguCCGGCa -3'
miRNA:   3'- -GCCGG--UGGCCCGg--UGC---CGCC-----------GGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.