Results 1 - 20 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 1597 | 0.65 | 0.881192 |
Target: 5'- cGCCAGCGUgcaggagcagcaGUUccGGCaCCUGcACCGGCg -3' miRNA: 3'- -CGGUCGUAa-----------CAA--CUG-GGGCuUGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 63924 | 0.66 | 0.875046 |
Target: 5'- -aCGGCGUUGUacGCgCCGAACUGGg -3' miRNA: 3'- cgGUCGUAACAacUGgGGCUUGGCUg -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 61702 | 0.66 | 0.867137 |
Target: 5'- uGCCgugGGCAggccgGGCCCCGGccaccuCCGACc -3' miRNA: 3'- -CGG---UCGUaacaaCUGGGGCUu-----GGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 15707 | 0.66 | 0.867137 |
Target: 5'- aCCGGCAUcGUgcuCCCgGAgacACCGACc -3' miRNA: 3'- cGGUCGUAaCAacuGGGgCU---UGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 9522 | 0.66 | 0.858983 |
Target: 5'- cGCCAGCucucc-GACCgCGAGCUGGu -3' miRNA: 3'- -CGGUCGuaacaaCUGGgGCUUGGCUg -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 18433 | 0.66 | 0.858983 |
Target: 5'- aCCGGCGgccgacgUGGCuCCCGAGCagGACg -3' miRNA: 3'- cGGUCGUaaca---ACUG-GGGCUUGg-CUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 34799 | 0.66 | 0.858983 |
Target: 5'- cGUCuGCAUUGcgGAgaaCCUGAccACCGACg -3' miRNA: 3'- -CGGuCGUAACaaCUg--GGGCU--UGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 66700 | 0.66 | 0.858983 |
Target: 5'- aCCGGCGgc--UGACCUCGgGGCCGAg -3' miRNA: 3'- cGGUCGUaacaACUGGGGC-UUGGCUg -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 41328 | 0.66 | 0.858983 |
Target: 5'- cGCCGagg-UGUUGGCCUCGAACUcGCc -3' miRNA: 3'- -CGGUcguaACAACUGGGGCUUGGcUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 25075 | 0.66 | 0.858983 |
Target: 5'- gGCCGG-GUUGgUGGCCUCGAuaacCCGAa -3' miRNA: 3'- -CGGUCgUAACaACUGGGGCUu---GGCUg -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 8585 | 0.66 | 0.854817 |
Target: 5'- uGCCgAGCAUgaacgcgccggUGGCCUCGAacaagcccggugcACCGGCa -3' miRNA: 3'- -CGG-UCGUAaca--------ACUGGGGCU-------------UGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 64398 | 0.66 | 0.850592 |
Target: 5'- uGCaCGGCGcgGUgaUGGCCUCGAACCcguuGGCc -3' miRNA: 3'- -CG-GUCGUaaCA--ACUGGGGCUUGG----CUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 64668 | 0.66 | 0.850592 |
Target: 5'- gGCCGuGCggUGUggcgcacuUGcCCCCGGcACCGGCc -3' miRNA: 3'- -CGGU-CGuaACA--------ACuGGGGCU-UGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 38246 | 0.66 | 0.850592 |
Target: 5'- gGCCAGCGca--UGuCCCCGgAGCUGAUc -3' miRNA: 3'- -CGGUCGUaacaACuGGGGC-UUGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 22941 | 0.66 | 0.850592 |
Target: 5'- gGCCAGCGUgcucagcugGUcGACUacgccaCCGGGCCgGACg -3' miRNA: 3'- -CGGUCGUAa--------CAaCUGG------GGCUUGG-CUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 67004 | 0.66 | 0.841971 |
Target: 5'- cGCCacGGCGg---UGAUCCUG-ACCGGCa -3' miRNA: 3'- -CGG--UCGUaacaACUGGGGCuUGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 2579 | 0.66 | 0.841971 |
Target: 5'- gGCCGGUGUgcccGACCcgaCCGAguacGCCGACg -3' miRNA: 3'- -CGGUCGUAacaaCUGG---GGCU----UGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 45375 | 0.67 | 0.832233 |
Target: 5'- gGCCAGCAggucgaUGcUGACCagcuccaCCGGACCcuGGCg -3' miRNA: 3'- -CGGUCGUa-----ACaACUGG-------GGCUUGG--CUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 38776 | 0.67 | 0.830435 |
Target: 5'- cGUCGGCAccuggaacagguacUUGcUGAuuuCCCCG-ACCGGCa -3' miRNA: 3'- -CGGUCGU--------------AACaACU---GGGGCuUGGCUG- -5' |
|||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 26315 | 0.67 | 0.829532 |
Target: 5'- gGCCAGgccgccgGGCCgCCGAuuGCCGACg -3' miRNA: 3'- -CGGUCguaacaaCUGG-GGCU--UGGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home