Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 3' | -54.8 | NC_004684.1 | + | 59693 | 0.66 | 0.823609 |
Target: 5'- cGCCGAGCUGC-GCGGGGug---CGGGu -3' miRNA: 3'- -CGGCUCGAUGuCGUCUUcugugGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 32157 | 0.66 | 0.823609 |
Target: 5'- aCCGGGCggcaccaggUACGGCacccacuccucGGAgguGGACACCGGc -3' miRNA: 3'- cGGCUCG---------AUGUCG-----------UCU---UCUGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 16537 | 0.66 | 0.823609 |
Target: 5'- cGCCGAGgUugAGCAcaucaugauGAcGcCACCGGa -3' miRNA: 3'- -CGGCUCgAugUCGU---------CUuCuGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 47782 | 0.66 | 0.823609 |
Target: 5'- cGCCGAGCgucaccgcCAGCAccucGGcCGCCGGa -3' miRNA: 3'- -CGGCUCGau------GUCGUcu--UCuGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 43173 | 0.66 | 0.822707 |
Target: 5'- cGCCGAggucGCU-CGGCGcGAugucgggcaccgcAGGCACCGGc -3' miRNA: 3'- -CGGCU----CGAuGUCGU-CU-------------UCUGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 9320 | 0.66 | 0.814502 |
Target: 5'- cGCCGAGgaACAGgAcGggGACGaggaggccuCCGGu -3' miRNA: 3'- -CGGCUCgaUGUCgU-CuuCUGU---------GGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 14375 | 0.66 | 0.814502 |
Target: 5'- cGCCGA-CU--GGCuGAccGACACCGGGc -3' miRNA: 3'- -CGGCUcGAugUCGuCUu-CUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 16374 | 0.66 | 0.814502 |
Target: 5'- uGCCG-GUggacCAGCAGGgcAGcUACCGGGc -3' miRNA: 3'- -CGGCuCGau--GUCGUCU--UCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 1445 | 0.66 | 0.814502 |
Target: 5'- gGCCGAGCUGgAcCaccuGGucGAgACCGGGc -3' miRNA: 3'- -CGGCUCGAUgUcG----UCuuCUgUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 61293 | 0.66 | 0.814502 |
Target: 5'- cGCCGGGUcgauuuccgGCAGCAcc-GcCGCCGGGc -3' miRNA: 3'- -CGGCUCGa--------UGUCGUcuuCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 62898 | 0.66 | 0.80521 |
Target: 5'- uGCCGuuGCcACGGCGGGccAGGCccugGCCGGu -3' miRNA: 3'- -CGGCu-CGaUGUCGUCU--UCUG----UGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7974 | 0.66 | 0.80521 |
Target: 5'- cCCGGaCggACGGCAgGAGGACGCCuGGa -3' miRNA: 3'- cGGCUcGa-UGUCGU-CUUCUGUGGcCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 34165 | 0.66 | 0.80521 |
Target: 5'- uGgUGAGCguaAGCAGuuGGGcCGCCGGGc -3' miRNA: 3'- -CgGCUCGaugUCGUCu-UCU-GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 6838 | 0.66 | 0.80521 |
Target: 5'- gGUCGAGUUcgaGGguGucgacGGCACCGGGc -3' miRNA: 3'- -CGGCUCGAug-UCguCuu---CUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 20546 | 0.66 | 0.795743 |
Target: 5'- gGCCaGGCauucgucCAGCuauAGGAGGCACCGuGGa -3' miRNA: 3'- -CGGcUCGau-----GUCG---UCUUCUGUGGC-CC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 8830 | 0.66 | 0.795743 |
Target: 5'- cGCaaGGGCUACAGCAaGGAGAagGCCGc- -3' miRNA: 3'- -CGg-CUCGAUGUCGU-CUUCUg-UGGCcc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 62718 | 0.66 | 0.795743 |
Target: 5'- gGuuGAGCUGCAaggcacGCAGGAcgguGuACACCGaGGc -3' miRNA: 3'- -CggCUCGAUGU------CGUCUU----C-UGUGGC-CC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7135 | 0.66 | 0.795743 |
Target: 5'- cGCCGAGgUACAccCGGAAGGuggccaccgcCugCGGGu -3' miRNA: 3'- -CGGCUCgAUGUc-GUCUUCU----------GugGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 19335 | 0.66 | 0.795743 |
Target: 5'- cGCCGuGGCcg-AGCGGGAGGCGCUGa- -3' miRNA: 3'- -CGGC-UCGaugUCGUCUUCUGUGGCcc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 57558 | 0.66 | 0.786109 |
Target: 5'- cGCCGAGCUGCGcCGGuuggccGACAUCGc- -3' miRNA: 3'- -CGGCUCGAUGUcGUCuu----CUGUGGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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