Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19261 | 3' | -61.6 | NC_004684.1 | + | 33816 | 0.66 | 0.483534 |
Target: 5'- uCGGCgUCGGcGG-G-CGGUgUGCCCGGCg -3' miRNA: 3'- -GCUGgAGCC-CCaCgGUCA-GCGGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 21048 | 0.66 | 0.483534 |
Target: 5'- aGACC-CGugcacGGGUGCCGGUgcUGaCCgGGCa -3' miRNA: 3'- gCUGGaGC-----CCCACGGUCA--GC-GGgUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 64030 | 0.66 | 0.482574 |
Target: 5'- uGACCUCGGugucggcGGUGUCGGccucgaacaccUCGUUgAGCg -3' miRNA: 3'- gCUGGAGCC-------CCACGGUC-----------AGCGGgUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 63876 | 0.66 | 0.482574 |
Target: 5'- gCGGCCuucaUCGGgcccagcGGUGCCAgGUgGUCCAGg -3' miRNA: 3'- -GCUGG----AGCC-------CCACGGU-CAgCGGGUCg -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 20348 | 0.66 | 0.476834 |
Target: 5'- uCGGCCUCcggguGGGGcggcuacugcgaagGCCAGUCGuuccccgacggcaCCCGGUu -3' miRNA: 3'- -GCUGGAG-----CCCCa-------------CGGUCAGC-------------GGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 67090 | 0.66 | 0.474929 |
Target: 5'- uGGCCUCGGcGGccagcgaacucuugUGCCAGgugugcacgaaggccUCGCCguCGGCc -3' miRNA: 3'- gCUGGAGCC-CC--------------ACGGUC---------------AGCGG--GUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 51731 | 0.66 | 0.473977 |
Target: 5'- aCGACgUUGGagagGCCuaccucguAGUCGUCCAGCa -3' miRNA: 3'- -GCUGgAGCCcca-CGG--------UCAGCGGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 57820 | 0.66 | 0.473977 |
Target: 5'- aCGGCCUgguccCGGcGGUGCUGGcCG-CCGGUa -3' miRNA: 3'- -GCUGGA-----GCC-CCACGGUCaGCgGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 40377 | 0.66 | 0.473977 |
Target: 5'- gGGCCUCGGcGGUGgCGGcC-UUCGGCa -3' miRNA: 3'- gCUGGAGCC-CCACgGUCaGcGGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 33178 | 0.66 | 0.473977 |
Target: 5'- uCGACCUCGGcaaGGUcgucaccgugGCCAuGgcgacggacaGCCCGGCg -3' miRNA: 3'- -GCUGGAGCC---CCA----------CGGU-Cag--------CGGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 62233 | 0.66 | 0.473977 |
Target: 5'- uCGACaUCGGGGUagcgcgGCUGGUCcuGCCC-GCu -3' miRNA: 3'- -GCUGgAGCCCCA------CGGUCAG--CGGGuCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 51635 | 0.66 | 0.473977 |
Target: 5'- gCGcACCuuUCGGuGUacgcgGCCAGUCGCUgGGCa -3' miRNA: 3'- -GC-UGG--AGCCcCA-----CGGUCAGCGGgUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 3651 | 0.66 | 0.464515 |
Target: 5'- uGGCCgcccGGUGCCgggucaucguacGGUgGCCCGGCa -3' miRNA: 3'- gCUGGagccCCACGG------------UCAgCGGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 24505 | 0.66 | 0.464515 |
Target: 5'- gCGGUCUCGG--UGCCAGagGCCgGGCg -3' miRNA: 3'- -GCUGGAGCCccACGGUCagCGGgUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 7297 | 0.66 | 0.464515 |
Target: 5'- aGaACUUCGGGGUGgcCCGGUgaagGCCC-GCa -3' miRNA: 3'- gC-UGGAGCCCCAC--GGUCAg---CGGGuCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 57019 | 0.66 | 0.463574 |
Target: 5'- -cGCCaUCGGGGUGCgcugguCGGUCacggugggccacgGCaCCAGCg -3' miRNA: 3'- gcUGG-AGCCCCACG------GUCAG-------------CG-GGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 20310 | 0.66 | 0.455153 |
Target: 5'- cCGACaccauggCGGcGGcgGCCAucgagaucggcGUCGCCCGGUg -3' miRNA: 3'- -GCUGga-----GCC-CCa-CGGU-----------CAGCGGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 29819 | 0.66 | 0.455153 |
Target: 5'- -cACCcUGGuGGUGCCAGagGauaCCCAGCu -3' miRNA: 3'- gcUGGaGCC-CCACGGUCagC---GGGUCG- -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 65032 | 0.66 | 0.455153 |
Target: 5'- gCGACCUCGuGGcUGa-GGUCGuCCCAGg -3' miRNA: 3'- -GCUGGAGC-CCcACggUCAGC-GGGUCg -5' |
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19261 | 3' | -61.6 | NC_004684.1 | + | 51886 | 0.66 | 0.455153 |
Target: 5'- cCGGCCcCGGGG-GCC--UUGUCCAGg -3' miRNA: 3'- -GCUGGaGCCCCaCGGucAGCGGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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