miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 5' -62.5 NC_004685.1 + 31750 0.66 0.432897
Target:  5'- -aGGUGCCGGCCagCuCCGACCacccgcccgcuGgGGUg -3'
miRNA:   3'- aaCCGCGGCUGGa-GuGGCUGG-----------CgCCG- -5'
19265 5' -62.5 NC_004685.1 + 18244 0.66 0.432897
Target:  5'- -gGGCGCacgGugCUCgcACCGauGCCGCaGCa -3'
miRNA:   3'- aaCCGCGg--CugGAG--UGGC--UGGCGcCG- -5'
19265 5' -62.5 NC_004685.1 + 37375 0.66 0.432897
Target:  5'- cUGGaUGCCGAUCUgcaggGCCG-CUGCGGUc -3'
miRNA:   3'- aACC-GCGGCUGGAg----UGGCuGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 55105 0.66 0.432897
Target:  5'- -cGGUGUCGACgUCGCCugcgacGCCaauccagcagugGCGGCg -3'
miRNA:   3'- aaCCGCGGCUGgAGUGGc-----UGG------------CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 51091 0.66 0.432897
Target:  5'- -aGGaCGuuGAUggCACCGaugcuGCCGCGGUg -3'
miRNA:   3'- aaCC-GCggCUGgaGUGGC-----UGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 46722 0.66 0.432897
Target:  5'- --aGCGUCGGgcuguaCUCACCGACCgGCaGCg -3'
miRNA:   3'- aacCGCGGCUg-----GAGUGGCUGG-CGcCG- -5'
19265 5' -62.5 NC_004685.1 + 36511 0.66 0.431993
Target:  5'- -cGGCGCCcACC--ACCGGCCGgugccacCGGUg -3'
miRNA:   3'- aaCCGCGGcUGGagUGGCUGGC-------GCCG- -5'
19265 5' -62.5 NC_004685.1 + 50497 0.66 0.431993
Target:  5'- -cGGCGCgugcgaugugcccCGACauguaccggUCGCCGauguaGCCGCGGCc -3'
miRNA:   3'- aaCCGCG-------------GCUGg--------AGUGGC-----UGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 65932 0.66 0.42749
Target:  5'- -aGuGCGCCGACUgcaucgcugaggggaUCGCCaACUgGCGGCc -3'
miRNA:   3'- aaC-CGCGGCUGG---------------AGUGGcUGG-CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 26592 0.66 0.423908
Target:  5'- cUGcGCGCCGGCggCaagucggcgGCCGACgUGUGGCg -3'
miRNA:   3'- aAC-CGCGGCUGgaG---------UGGCUG-GCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 7774 0.66 0.423908
Target:  5'- cUGGCGUCGGUCggugCGCgaCGGCCuGUGGCa -3'
miRNA:   3'- aACCGCGGCUGGa---GUG--GCUGG-CGCCG- -5'
19265 5' -62.5 NC_004685.1 + 58568 0.66 0.423908
Target:  5'- -gGGCGuuGaACCUaucgcgccaaGCaCGAUCGCGGUg -3'
miRNA:   3'- aaCCGCggC-UGGAg---------UG-GCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 31421 0.66 0.423908
Target:  5'- cUGGuCGaCCagcuucucaauGGCCUCGCCGaugguGCCGgGGCc -3'
miRNA:   3'- aACC-GC-GG-----------CUGGAGUGGC-----UGGCgCCG- -5'
19265 5' -62.5 NC_004685.1 + 50756 0.66 0.415032
Target:  5'- cUUGGcCGCCagcaucucGCCcgCGCCG-UCGCGGCg -3'
miRNA:   3'- -AACC-GCGGc-------UGGa-GUGGCuGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 25330 0.66 0.415032
Target:  5'- -gGGaUGCCcaGCUUCuccCCGAUCGCGGCc -3'
miRNA:   3'- aaCC-GCGGc-UGGAGu--GGCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 60896 0.66 0.415032
Target:  5'- -cGGCGCguAUCUCGauGGCCGUGGUg -3'
miRNA:   3'- aaCCGCGgcUGGAGUggCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 8314 0.66 0.415032
Target:  5'- gUGGCccccGCCGAgCggguUCACCGGCuaCGaCGGCg -3'
miRNA:   3'- aACCG----CGGCUgG----AGUGGCUG--GC-GCCG- -5'
19265 5' -62.5 NC_004685.1 + 33105 0.66 0.415032
Target:  5'- gUUGGUGCgCGACUg----GAUCGCGGCg -3'
miRNA:   3'- -AACCGCG-GCUGGaguggCUGGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 64535 0.66 0.415032
Target:  5'- gUGGcCGUCGAgugugcCCUCgucguuguuGCCGAgCGCGGUc -3'
miRNA:   3'- aACC-GCGGCU------GGAG---------UGGCUgGCGCCG- -5'
19265 5' -62.5 NC_004685.1 + 62733 0.66 0.415032
Target:  5'- aUGGCuGCgGGCUUgACCGGCUcgGgGGCc -3'
miRNA:   3'- aACCG-CGgCUGGAgUGGCUGG--CgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.