miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19278 5' -61.7 NC_004685.1 + 8409 0.66 0.451637
Target:  5'- uGugCCUGCGGCUgccCGaCGGuGuGGUCg -3'
miRNA:   3'- gUugGGACGCCGA---GC-GCCuCuCCGGg -5'
19278 5' -61.7 NC_004685.1 + 23298 0.66 0.450708
Target:  5'- -cGCCC-GCGGCcaCGCcGAGAaccgcguGGCCCa -3'
miRNA:   3'- guUGGGaCGCCGa-GCGcCUCU-------CCGGG- -5'
19278 5' -61.7 NC_004685.1 + 20029 0.66 0.433261
Target:  5'- gCGACCCgccgggGCGGaucaUCGCGGGGuucgucGCCa -3'
miRNA:   3'- -GUUGGGa-----CGCCg---AGCGCCUCuc----CGGg -5'
19278 5' -61.7 NC_004685.1 + 8949 0.66 0.425135
Target:  5'- ---gCCUGCGGCaugugcuggcgauccUGCGGAuGGGGCCg -3'
miRNA:   3'- guugGGACGCCGa--------------GCGCCU-CUCCGGg -5'
19278 5' -61.7 NC_004685.1 + 21297 0.66 0.424238
Target:  5'- gCAACagCUGUGGUggCGCGGcGAGGCg- -3'
miRNA:   3'- -GUUGg-GACGCCGa-GCGCCuCUCCGgg -5'
19278 5' -61.7 NC_004685.1 + 15616 0.67 0.410037
Target:  5'- gCGACCCUGacauGGUggaauucCGCGGAcccgaggaggagcccGAGGCUCg -3'
miRNA:   3'- -GUUGGGACg---CCGa------GCGCCU---------------CUCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 12803 0.67 0.406533
Target:  5'- aGGCCgaGCGGCUgGCGGGccGuGCCg -3'
miRNA:   3'- gUUGGgaCGCCGAgCGCCUcuC-CGGg -5'
19278 5' -61.7 NC_004685.1 + 11312 0.67 0.397857
Target:  5'- ---gCCUGCGGgagUCGUGGAuGGGCCg -3'
miRNA:   3'- guugGGACGCCg--AGCGCCUcUCCGGg -5'
19278 5' -61.7 NC_004685.1 + 7157 0.67 0.395277
Target:  5'- uCGGCgggGUGGCcaUCGCGGuguccgagccgucgGGAGGCCCg -3'
miRNA:   3'- -GUUGggaCGCCG--AGCGCC--------------UCUCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 3945 0.67 0.3893
Target:  5'- gGACCCUcaGCGGCUCaggcuCGGGcGcGGUCCa -3'
miRNA:   3'- gUUGGGA--CGCCGAGc----GCCU-CuCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 40961 0.67 0.380865
Target:  5'- gGAUUCUGCGGCcgCGCGGcaAGAucGGUUCa -3'
miRNA:   3'- gUUGGGACGCCGa-GCGCC--UCU--CCGGG- -5'
19278 5' -61.7 NC_004685.1 + 70 0.67 0.372552
Target:  5'- gAACCCc-CGGCaUCGgGGGGGGGUgCCg -3'
miRNA:   3'- gUUGGGacGCCG-AGCgCCUCUCCG-GG- -5'
19278 5' -61.7 NC_004685.1 + 50970 0.68 0.366808
Target:  5'- -uGCCCUcGUGGCgauccuucucuuuUCGUGGGGAaaagaaagguggugcGGCCCc -3'
miRNA:   3'- guUGGGA-CGCCG-------------AGCGCCUCU---------------CCGGG- -5'
19278 5' -61.7 NC_004685.1 + 4705 0.68 0.364364
Target:  5'- gGGCUgUGCGGCUaCGCGaucaucccggccGAGGGGCauCCg -3'
miRNA:   3'- gUUGGgACGCCGA-GCGC------------CUCUCCG--GG- -5'
19278 5' -61.7 NC_004685.1 + 5605 0.68 0.364364
Target:  5'- cCAGaCCUGCGGgaCGCGGGGGuGGUg- -3'
miRNA:   3'- -GUUgGGACGCCgaGCGCCUCU-CCGgg -5'
19278 5' -61.7 NC_004685.1 + 59299 0.68 0.357102
Target:  5'- aGGCCCaccgcggcgucgaugGCGGCgUCGCGGGuGuuGCCCu -3'
miRNA:   3'- gUUGGGa--------------CGCCG-AGCGCCU-CucCGGG- -5'
19278 5' -61.7 NC_004685.1 + 12447 0.68 0.356302
Target:  5'- gCAGCCCUGCgccccuGGgUCGacaacGAGGGGCCg -3'
miRNA:   3'- -GUUGGGACG------CCgAGCgc---CUCUCCGGg -5'
19278 5' -61.7 NC_004685.1 + 19260 0.68 0.325319
Target:  5'- --gUUCUGCGaCgUCGUGGAuGAGGCCCu -3'
miRNA:   3'- guuGGGACGCcG-AGCGCCU-CUCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 9144 0.69 0.303426
Target:  5'- uCAACgCCUGCuGCa-GCGGAGAGGacugCCg -3'
miRNA:   3'- -GUUG-GGACGcCGagCGCCUCUCCg---GG- -5'
19278 5' -61.7 NC_004685.1 + 34049 0.69 0.292221
Target:  5'- -cACCCUGCaugGGCcuggcacguuuuacaUCGCGGcuGGGCCUg -3'
miRNA:   3'- guUGGGACG---CCG---------------AGCGCCucUCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.