miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19280 5' -60.7 NC_004685.1 + 50507 0.66 0.490399
Target:  5'- cCGGCA-GCCCCGgagccauccaucuccUCCcacaGCCCGaCGCCg -3'
miRNA:   3'- uGUUGUaCGGGGU---------------AGG----CGGGC-GCGGa -5'
19280 5' -60.7 NC_004685.1 + 48236 0.66 0.486468
Target:  5'- aAC-ACcgGCCgCCAguagCCGCCUGUGCa- -3'
miRNA:   3'- -UGuUGuaCGG-GGUa---GGCGGGCGCGga -5'
19280 5' -60.7 NC_004685.1 + 48210 0.66 0.486468
Target:  5'- cGCggUAUGUCUCga-CGCCCGUGUCg -3'
miRNA:   3'- -UGuuGUACGGGGuagGCGGGCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 58065 0.66 0.467043
Target:  5'- -gGugGUGUCCCA-CCGgCUGCGCUc -3'
miRNA:   3'- ugUugUACGGGGUaGGCgGGCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 12430 0.66 0.448027
Target:  5'- aGCGGCuGUGaCCgCCcgCCGCCgaGCGCCc -3'
miRNA:   3'- -UGUUG-UAC-GG-GGuaGGCGGg-CGCGGa -5'
19280 5' -60.7 NC_004685.1 + 56879 0.66 0.448027
Target:  5'- gACGGCAcGCCCgCcagCCGCUCG-GCCUg -3'
miRNA:   3'- -UGUUGUaCGGG-Gua-GGCGGGCgCGGA- -5'
19280 5' -60.7 NC_004685.1 + 51665 0.66 0.448027
Target:  5'- uGCGGCAgcGCCUCGUCggUGCCCGCGg-- -3'
miRNA:   3'- -UGUUGUa-CGGGGUAG--GCGGGCGCgga -5'
19280 5' -60.7 NC_004685.1 + 29088 0.67 0.438681
Target:  5'- -gAugGUGCCgCCGagggaaCCGgCCGCGCCg -3'
miRNA:   3'- ugUugUACGG-GGUa-----GGCgGGCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 16127 0.67 0.438681
Target:  5'- cACGGCcacgGuCCCCuggagucggCCGCgCCGCGCCa -3'
miRNA:   3'- -UGUUGua--C-GGGGua-------GGCG-GGCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 11346 0.67 0.433127
Target:  5'- gGCGACccGCCCCGacaccgaggcugugCCGgCCGgGCCg -3'
miRNA:   3'- -UGUUGuaCGGGGUa-------------GGCgGGCgCGGa -5'
19280 5' -60.7 NC_004685.1 + 34464 0.67 0.420329
Target:  5'- cGCcGCAcGUCuCCAUCCGCaCCGUGCg- -3'
miRNA:   3'- -UGuUGUaCGG-GGUAGGCG-GGCGCGga -5'
19280 5' -60.7 NC_004685.1 + 58635 0.67 0.420329
Target:  5'- cCGACAUGCgU--UCgGCCCGCGUCg -3'
miRNA:   3'- uGUUGUACGgGguAGgCGGGCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 9583 0.67 0.420329
Target:  5'- aACGACGuguucuccUGCCCCAUCgGUUCGgGCg- -3'
miRNA:   3'- -UGUUGU--------ACGGGGUAGgCGGGCgCGga -5'
19280 5' -60.7 NC_004685.1 + 30076 0.67 0.411329
Target:  5'- uCGGCAa-CCUguUCCGCgCCGCGCCg -3'
miRNA:   3'- uGUUGUacGGGguAGGCG-GGCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 10099 0.67 0.411329
Target:  5'- cGCAGCcgGUGCgcucaCCCGccgCCGCCUGCGCa- -3'
miRNA:   3'- -UGUUG--UACG-----GGGUa--GGCGGGCGCGga -5'
19280 5' -60.7 NC_004685.1 + 201 0.67 0.403332
Target:  5'- uCGAcCAUGCCCCGcgucaucaaaggcgaCUGCCCGCGUUUg -3'
miRNA:   3'- uGUU-GUACGGGGUa--------------GGCGGGCGCGGA- -5'
19280 5' -60.7 NC_004685.1 + 66795 0.68 0.376554
Target:  5'- gGCcGgGUGCCCgAUCCugGCCaGCGCCg -3'
miRNA:   3'- -UGuUgUACGGGgUAGG--CGGgCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 20794 0.68 0.368175
Target:  5'- cGCGGCA-GCCCCGUCgGCaCCGagGUCg -3'
miRNA:   3'- -UGUUGUaCGGGGUAGgCG-GGCg-CGGa -5'
19280 5' -60.7 NC_004685.1 + 2551 0.68 0.368175
Target:  5'- aGguGCGUGCCCUccaggCUGCaCUGCGCCg -3'
miRNA:   3'- -UguUGUACGGGGua---GGCG-GGCGCGGa -5'
19280 5' -60.7 NC_004685.1 + 20298 0.68 0.359925
Target:  5'- gACGGCGUGCCCUacGUCUaugucgauguGCCCGacggGCCg -3'
miRNA:   3'- -UGUUGUACGGGG--UAGG----------CGGGCg---CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.