miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19284 3' -54.9 NC_004685.1 + 8423 0.66 0.800639
Target:  5'- aGAugGCC-CGCGUAGC--CGUgGACg -3'
miRNA:   3'- gCUugUGGaGCGCGUCGucGCAgUUG- -5'
19284 3' -54.9 NC_004685.1 + 34129 0.66 0.800639
Target:  5'- gCGGGCAggUgGUGCAGCuGCG-CAGCg -3'
miRNA:   3'- -GCUUGUggAgCGCGUCGuCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 63356 0.66 0.800639
Target:  5'- cCGAACACCUUcaGCGCcgAGgGGCG-CGGa -3'
miRNA:   3'- -GCUUGUGGAG--CGCG--UCgUCGCaGUUg -5'
19284 3' -54.9 NC_004685.1 + 42827 0.66 0.800639
Target:  5'- aGGuCGCCcuguUUGCGCugAGCGGCGgCAACg -3'
miRNA:   3'- gCUuGUGG----AGCGCG--UCGUCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 46456 0.66 0.800639
Target:  5'- ----aGCUUCGcCGCGGCcuuGGCGUCGAg -3'
miRNA:   3'- gcuugUGGAGC-GCGUCG---UCGCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 55263 0.66 0.800639
Target:  5'- cCGAGCGCUUCGCGgCGGaaccCGUCGu- -3'
miRNA:   3'- -GCUUGUGGAGCGC-GUCguc-GCAGUug -5'
19284 3' -54.9 NC_004685.1 + 33603 0.66 0.800639
Target:  5'- aGAAUA--UCGCGguGCguAGCGUCGAg -3'
miRNA:   3'- gCUUGUggAGCGCguCG--UCGCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 5871 0.66 0.800639
Target:  5'- gGAucuGCACCgggagGCGCAggagcaggcGCAGCGUgAGCa -3'
miRNA:   3'- gCU---UGUGGag---CGCGU---------CGUCGCAgUUG- -5'
19284 3' -54.9 NC_004685.1 + 162 0.66 0.800639
Target:  5'- gGAGCugCUCggcuugcccuuGCGCGGCGuGCGcgcggguuUCGGCg -3'
miRNA:   3'- gCUUGugGAG-----------CGCGUCGU-CGC--------AGUUG- -5'
19284 3' -54.9 NC_004685.1 + 66499 0.66 0.791016
Target:  5'- uCGGggcGCGCCUccCGCGCcuuGGCGGCcaCAGCg -3'
miRNA:   3'- -GCU---UGUGGA--GCGCG---UCGUCGcaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 53533 0.66 0.791016
Target:  5'- cCGAugACgACCUgGCGCGGC-GCGgcCGACu -3'
miRNA:   3'- -GCU--UG-UGGAgCGCGUCGuCGCa-GUUG- -5'
19284 3' -54.9 NC_004685.1 + 33084 0.66 0.791016
Target:  5'- gCGAgcGCACC-CGC-CAGguccuCGGCGUCGGCc -3'
miRNA:   3'- -GCU--UGUGGaGCGcGUC-----GUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 38222 0.66 0.790044
Target:  5'- gGAACGCCUUGcCGCuGCugccguaaccgccGGUGUCggUa -3'
miRNA:   3'- gCUUGUGGAGC-GCGuCG-------------UCGCAGuuG- -5'
19284 3' -54.9 NC_004685.1 + 58682 0.66 0.78123
Target:  5'- uCGAagcgGC-CCUUGCGCaggaacuccggcGGCAGCuUCGACg -3'
miRNA:   3'- -GCU----UGuGGAGCGCG------------UCGUCGcAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 5910 0.66 0.78123
Target:  5'- gGGugGCCaUCGCGUucaucccucGCGGCG-CGACg -3'
miRNA:   3'- gCUugUGG-AGCGCGu--------CGUCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 60620 0.66 0.78123
Target:  5'- uCGGugACCgcaaCGuCGCGGguGCG-CGACc -3'
miRNA:   3'- -GCUugUGGa---GC-GCGUCguCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 68131 0.66 0.771292
Target:  5'- gCGAucacGCGCgUCGCGCAcGCGGgcaaaGUCAAa -3'
miRNA:   3'- -GCU----UGUGgAGCGCGU-CGUCg----CAGUUg -5'
19284 3' -54.9 NC_004685.1 + 57367 0.66 0.771292
Target:  5'- uGGACACCaccCGaCGCcagcugcGCAGCGUCAu- -3'
miRNA:   3'- gCUUGUGGa--GC-GCGu------CGUCGCAGUug -5'
19284 3' -54.9 NC_004685.1 + 65993 0.66 0.761212
Target:  5'- gCGAuACACC-CGCGCcgAGCcgucGGCGUCGc- -3'
miRNA:   3'- -GCU-UGUGGaGCGCG--UCG----UCGCAGUug -5'
19284 3' -54.9 NC_004685.1 + 51666 0.66 0.761212
Target:  5'- gCGGcaGCGCCUCGuCGguGCccGCGgaggUCAGCa -3'
miRNA:   3'- -GCU--UGUGGAGC-GCguCGu-CGC----AGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.