miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19557 5' -59.7 NC_004686.1 + 24045 0.66 0.481662
Target:  5'- cAGCCaggUACCCGgCCGacuCCCCgAGC-CCGa -3'
miRNA:   3'- -UCGGa--AUGGGCaGGU---GGGG-UCGuGGU- -5'
19557 5' -59.7 NC_004686.1 + 37957 0.66 0.471747
Target:  5'- gGGCCgaccUGCCCGU-CACCCgCAaCGCCc -3'
miRNA:   3'- -UCGGa---AUGGGCAgGUGGG-GUcGUGGu -5'
19557 5' -59.7 NC_004686.1 + 47967 0.66 0.464869
Target:  5'- aAGCCUcuacacgUACCUccguauguggaacguGUUCACCCCGGaggGCCAa -3'
miRNA:   3'- -UCGGA-------AUGGG---------------CAGGUGGGGUCg--UGGU- -5'
19557 5' -59.7 NC_004686.1 + 19274 0.67 0.405476
Target:  5'- cGCCcacACCCGU--ACCaCCAGCACCc -3'
miRNA:   3'- uCGGaa-UGGGCAggUGG-GGUCGUGGu -5'
19557 5' -59.7 NC_004686.1 + 11883 0.67 0.387643
Target:  5'- aAGUCguuggcGCCC-UUCGCCCCAGCcCCAu -3'
miRNA:   3'- -UCGGaa----UGGGcAGGUGGGGUCGuGGU- -5'
19557 5' -59.7 NC_004686.1 + 47908 0.68 0.370334
Target:  5'- cGCCgccGCUCaugacaUCCGCCCCcGCGCCAa -3'
miRNA:   3'- uCGGaa-UGGGc-----AGGUGGGGuCGUGGU- -5'
19557 5' -59.7 NC_004686.1 + 55583 0.68 0.36188
Target:  5'- cGCUgacUACCUGUCCAUCgacgaCGGCACCc -3'
miRNA:   3'- uCGGa--AUGGGCAGGUGGg----GUCGUGGu -5'
19557 5' -59.7 NC_004686.1 + 43680 0.68 0.361041
Target:  5'- cGCCUagACCCGuugaUCCGCCCaucauugCGGCGCUg -3'
miRNA:   3'- uCGGAa-UGGGC----AGGUGGG-------GUCGUGGu -5'
19557 5' -59.7 NC_004686.1 + 54454 0.7 0.277913
Target:  5'- uGCCcUGCCCGacgCCgaACUCCAGUGCCGu -3'
miRNA:   3'- uCGGaAUGGGCa--GG--UGGGGUCGUGGU- -5'
19557 5' -59.7 NC_004686.1 + 22729 0.7 0.264425
Target:  5'- cAGCUc-ACCCG-CCuaacCCCCGGCGCCGc -3'
miRNA:   3'- -UCGGaaUGGGCaGGu---GGGGUCGUGGU- -5'
19557 5' -59.7 NC_004686.1 + 33933 0.7 0.264425
Target:  5'- cGGCCUU-CgCGU-CACCCCGGC-CCAa -3'
miRNA:   3'- -UCGGAAuGgGCAgGUGGGGUCGuGGU- -5'
19557 5' -59.7 NC_004686.1 + 28246 0.7 0.257883
Target:  5'- cGCCgaACCCGgaguaCCACCCggaguGGCGCCAa -3'
miRNA:   3'- uCGGaaUGGGCa----GGUGGGg----UCGUGGU- -5'
19557 5' -59.7 NC_004686.1 + 21091 0.71 0.223094
Target:  5'- cGCCgcagcagcgaaacUACCCGUaCCGCCCCcaauaccagugaucGGCGCCGa -3'
miRNA:   3'- uCGGa------------AUGGGCA-GGUGGGG--------------UCGUGGU- -5'
19557 5' -59.7 NC_004686.1 + 54296 0.74 0.133698
Target:  5'- cAGCCUUGgUCG-CCGCCUCGGCAaCCAg -3'
miRNA:   3'- -UCGGAAUgGGCaGGUGGGGUCGU-GGU- -5'
19557 5' -59.7 NC_004686.1 + 2456 1.08 0.000401
Target:  5'- cAGCCUUACCCGUCCACCCCAGCACCAg -3'
miRNA:   3'- -UCGGAAUGGGCAGGUGGGGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.