Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19571 | 5' | -50.1 | NC_004686.1 | + | 113 | 0.76 | 0.396545 |
Target: 5'- cGCUCCGuGUGCGUUGCgGAUcACCGCg -3' miRNA: 3'- cCGAGGUuCGUGUAACGgUUA-UGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 4213 | 0.67 | 0.882783 |
Target: 5'- cGGCUCCAccGGCAac--GCUug-ACCACc -3' miRNA: 3'- -CCGAGGU--UCGUguaaCGGuuaUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 6496 | 0.66 | 0.923643 |
Target: 5'- uGGCUCCugcucguagaucGGCugAcccGCCAGaACCGCa -3' miRNA: 3'- -CCGAGGu-----------UCGugUaa-CGGUUaUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 9594 | 0.67 | 0.882783 |
Target: 5'- cGUUCCGAcaGCGUUGCCGAUcuucuccCCACg -3' miRNA: 3'- cCGAGGUUcgUGUAACGGUUAu------GGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 10458 | 1.12 | 0.001763 |
Target: 5'- cGGCUCCAAGCACAUUGCCAAUACCACc -3' miRNA: 3'- -CCGAGGUUCGUGUAACGGUUAUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 11676 | 0.66 | 0.936485 |
Target: 5'- gGGCUUCAAGCccggaGCAUugaaUGUCGGaACCAa -3' miRNA: 3'- -CCGAGGUUCG-----UGUA----ACGGUUaUGGUg -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 13036 | 0.7 | 0.748597 |
Target: 5'- cGGCgcugCCGAGCACccUGCUu---CCACg -3' miRNA: 3'- -CCGa---GGUUCGUGuaACGGuuauGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 19590 | 0.66 | 0.930831 |
Target: 5'- cGGCUCCGggguaGGCGCAU--CC---ACCGCa -3' miRNA: 3'- -CCGAGGU-----UCGUGUAacGGuuaUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 21299 | 0.7 | 0.748597 |
Target: 5'- uGGC-CCAGGCACcgcugcUGaCCGAcACCACa -3' miRNA: 3'- -CCGaGGUUCGUGua----AC-GGUUaUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 22375 | 0.7 | 0.726537 |
Target: 5'- cGGCUCCAauggcggcaccGGCACcgaugGCUAcaACCGCa -3' miRNA: 3'- -CCGAGGU-----------UCGUGuaa--CGGUuaUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 22490 | 0.66 | 0.93426 |
Target: 5'- aGGCUgguacagCCAgucgaugcgguuguAGC-CAUcggUGCCGGUGCCGCc -3' miRNA: 3'- -CCGA-------GGU--------------UCGuGUA---ACGGUUAUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 23318 | 0.68 | 0.849005 |
Target: 5'- cGGUaaauUCCGAGUAgG-UGCCuguUGCCGCa -3' miRNA: 3'- -CCG----AGGUUCGUgUaACGGuu-AUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 24429 | 0.73 | 0.600541 |
Target: 5'- gGGCUCCAcacGGCGCcUUGUCc--GCCGCu -3' miRNA: 3'- -CCGAGGU---UCGUGuAACGGuuaUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 25894 | 0.71 | 0.715345 |
Target: 5'- cGGCcgcgggCC-GGCGCAcaGCCAGUACCAg -3' miRNA: 3'- -CCGa-----GGuUCGUGUaaCGGUUAUGGUg -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 26307 | 0.66 | 0.924872 |
Target: 5'- uGGCUgCCGAcaaACAacGCCAAUGCgCACa -3' miRNA: 3'- -CCGA-GGUUcg-UGUaaCGGUUAUG-GUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 26422 | 0.7 | 0.748597 |
Target: 5'- gGGUgggCCAGGCGCAU--UCGAUGCCGa -3' miRNA: 3'- -CCGa--GGUUCGUGUAacGGUUAUGGUg -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 33500 | 0.66 | 0.924872 |
Target: 5'- uGGCaggCCGAGCACAUggUGCC----CCAg -3' miRNA: 3'- -CCGa--GGUUCGUGUA--ACGGuuauGGUg -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 37129 | 0.77 | 0.377689 |
Target: 5'- cGCUCCAGGCGC---GCCA--ACCACg -3' miRNA: 3'- cCGAGGUUCGUGuaaCGGUuaUGGUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 39646 | 0.66 | 0.91204 |
Target: 5'- uGCUCCGAccGCACAgUGUCAcgggugaggGUGCgGCa -3' miRNA: 3'- cCGAGGUU--CGUGUaACGGU---------UAUGgUG- -5' |
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19571 | 5' | -50.1 | NC_004686.1 | + | 39761 | 0.7 | 0.726537 |
Target: 5'- gGGCUUCGccgcGGCugA-UGCCG-UGCCGCa -3' miRNA: 3'- -CCGAGGU----UCGugUaACGGUuAUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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