Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19571 | 5' | -50.1 | NC_004686.1 | + | 39761 | 0.7 | 0.726537 |
|
Target: 5'- gGGCUUCGccgcGGCugA-UGCCG-UGCCGCa -3' miRNA: 3'- -CCGAGGU----UCGugUaACGGUuAUGGUG- -5' |
|||||||
| 19571 | 5' | -50.1 | NC_004686.1 | + | 22375 | 0.7 | 0.726537 |
|
Target: 5'- cGGCUCCAauggcggcaccGGCACcgaugGCUAcaACCGCa -3' miRNA: 3'- -CCGAGGU-----------UCGUGuaa--CGGUuaUGGUG- -5' |
|||||||
| 19571 | 5' | -50.1 | NC_004686.1 | + | 25894 | 0.71 | 0.715345 |
|
Target: 5'- cGGCcgcgggCC-GGCGCAcaGCCAGUACCAg -3' miRNA: 3'- -CCGa-----GGuUCGUGUaaCGGUUAUGGUg -5' |
|||||||
| 19571 | 5' | -50.1 | NC_004686.1 | + | 24429 | 0.73 | 0.600541 |
|
Target: 5'- gGGCUCCAcacGGCGCcUUGUCc--GCCGCu -3' miRNA: 3'- -CCGAGGU---UCGUGuAACGGuuaUGGUG- -5' |
|||||||
| 19571 | 5' | -50.1 | NC_004686.1 | + | 113 | 0.76 | 0.396545 |
|
Target: 5'- cGCUCCGuGUGCGUUGCgGAUcACCGCg -3' miRNA: 3'- cCGAGGUuCGUGUAACGgUUA-UGGUG- -5' |
|||||||
| 19571 | 5' | -50.1 | NC_004686.1 | + | 37129 | 0.77 | 0.377689 |
|
Target: 5'- cGCUCCAGGCGC---GCCA--ACCACg -3' miRNA: 3'- cCGAGGUUCGUGuaaCGGUuaUGGUG- -5' |
|||||||
| 19571 | 5' | -50.1 | NC_004686.1 | + | 10458 | 1.12 | 0.001763 |
|
Target: 5'- cGGCUCCAAGCACAUUGCCAAUACCACc -3' miRNA: 3'- -CCGAGGUUCGUGUAACGGUUAUGGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home