miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19621 3' -54 NC_004686.1 + 21829 0.66 0.81247
Target:  5'- uGCGCcucGGCGGCGCggGCGCGGGcGGc -3'
miRNA:   3'- gUGUGc--UUGCCGUGagUGCGCUCaCU- -5'
19621 3' -54 NC_004686.1 + 48899 0.66 0.802949
Target:  5'- cCACGCGGACGGCGCacggaaUCugGCc----- -3'
miRNA:   3'- -GUGUGCUUGCCGUG------AGugCGcucacu -5'
19621 3' -54 NC_004686.1 + 10852 0.67 0.767263
Target:  5'- gACACGAACGcguccagggcggcuuGCGC-CGCGgGGGUGc -3'
miRNA:   3'- gUGUGCUUGC---------------CGUGaGUGCgCUCACu -5'
19621 3' -54 NC_004686.1 + 7771 0.67 0.707263
Target:  5'- gACGCGAuagcugaacucgauGCGGCGCUCGaacCGCauggcuggauGGGUGAu -3'
miRNA:   3'- gUGUGCU--------------UGCCGUGAGU---GCG----------CUCACU- -5'
19621 3' -54 NC_004686.1 + 22823 0.68 0.688805
Target:  5'- -cCGCGAuagccGCGGCGCcgggggUUAgGCGGGUGAg -3'
miRNA:   3'- guGUGCU-----UGCCGUG------AGUgCGCUCACU- -5'
19621 3' -54 NC_004686.1 + 40273 0.68 0.677869
Target:  5'- -cCGCaAGCGuCACUCGCGUGAGUGc -3'
miRNA:   3'- guGUGcUUGCcGUGAGUGCGCUCACu -5'
19621 3' -54 NC_004686.1 + 30445 0.68 0.66689
Target:  5'- -cCGCGGACauccuccggGGUAUUCACGCGGGaGAg -3'
miRNA:   3'- guGUGCUUG---------CCGUGAGUGCGCUCaCU- -5'
19621 3' -54 NC_004686.1 + 47140 0.71 0.503712
Target:  5'- aGgGCGucCGGCugUCccuCGCGGGUGAg -3'
miRNA:   3'- gUgUGCuuGCCGugAGu--GCGCUCACU- -5'
19621 3' -54 NC_004686.1 + 854 0.72 0.452786
Target:  5'- uGCGugaGGACGGCACgCugGCGuGUGAu -3'
miRNA:   3'- gUGUg--CUUGCCGUGaGugCGCuCACU- -5'
19621 3' -54 NC_004686.1 + 40363 1.09 0.001576
Target:  5'- cCACACGAACGGCACUCACGCGAGUGAc -3'
miRNA:   3'- -GUGUGCUUGCCGUGAGUGCGCUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.