Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19657 | 5' | -53.9 | NC_004686.1 | + | 5558 | 0.66 | 0.842076 |
Target: 5'- aUCAGgGCGuGGACCUgagccGCCUgguaAUCCCc -3' miRNA: 3'- -GGUCaUGCuCCUGGGac---UGGA----UAGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 41326 | 0.66 | 0.824319 |
Target: 5'- uUCGGUG-GAGGaaGCCCgaGACCUcgCCg -3' miRNA: 3'- -GGUCAUgCUCC--UGGGa-CUGGAuaGGg -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 14223 | 0.66 | 0.796211 |
Target: 5'- uCCGGUcACGuGGAUUCUGAaaCUcgCCCu -3' miRNA: 3'- -GGUCA-UGCuCCUGGGACUg-GAuaGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 12586 | 0.68 | 0.725218 |
Target: 5'- aCCAGUGCGAccgccuaGACCCguUGAUCcg-CCCa -3' miRNA: 3'- -GGUCAUGCUc------CUGGG--ACUGGauaGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 15640 | 0.68 | 0.714619 |
Target: 5'- uCCGGUG-GAGGAaCCUGACCcggagccgaAUCCUg -3' miRNA: 3'- -GGUCAUgCUCCUgGGACUGGa--------UAGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 39484 | 0.68 | 0.714619 |
Target: 5'- aCCAGaacUGCGAGGugCCguuaaUGAUCag-CCCa -3' miRNA: 3'- -GGUC---AUGCUCCugGG-----ACUGGauaGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 11137 | 0.69 | 0.686716 |
Target: 5'- gCCAGUguuugGCGAGGAUCUgucggcaguagggguUgauuucGACCUGUCCUa -3' miRNA: 3'- -GGUCA-----UGCUCCUGGG---------------A------CUGGAUAGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 3292 | 0.69 | 0.626764 |
Target: 5'- aUCAGgcgGCGAGccaugcgccgcauGAUCCUGGCCg--CCCg -3' miRNA: 3'- -GGUCa--UGCUC-------------CUGGGACUGGauaGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 23372 | 0.72 | 0.482993 |
Target: 5'- gCAGUACGAuguugacaccaauguGGACaCCUaGACCUGgagcagCCCg -3' miRNA: 3'- gGUCAUGCU---------------CCUG-GGA-CUGGAUa-----GGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 47627 | 0.73 | 0.449135 |
Target: 5'- aCCGGUACGGGGAUCCgacACCggagCCg -3' miRNA: 3'- -GGUCAUGCUCCUGGGac-UGGaua-GGg -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 5010 | 0.74 | 0.401838 |
Target: 5'- gCAGUACau-GACCCUGACCgc-CCCg -3' miRNA: 3'- gGUCAUGcucCUGGGACUGGauaGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 37657 | 0.76 | 0.273375 |
Target: 5'- cCUGGUAUGGGGACaCUGGCCggAUCCUg -3' miRNA: 3'- -GGUCAUGCUCCUGgGACUGGa-UAGGG- -5' |
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19657 | 5' | -53.9 | NC_004686.1 | + | 13187 | 1.13 | 0.00094 |
Target: 5'- uCCAGUACGAGGACCCUGACCUAUCCCc -3' miRNA: 3'- -GGUCAUGCUCCUGGGACUGGAUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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