miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19734 3' -60.8 NC_004687.1 + 153561 0.65 0.715191
Target:  5'- -aUCugGCGGCG-CUGGCCgaccugcgcaacgaUAGCGGu -3'
miRNA:   3'- agAGugCGUCGUgGACCGG--------------GUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 10920 0.66 0.708383
Target:  5'- aCUCuggggccgggguGCGgAGCuggcCCUGGUCuCGGCGGAc -3'
miRNA:   3'- aGAG------------UGCgUCGu---GGACCGG-GUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 27890 0.66 0.708383
Target:  5'- -gUCGCGCGGCguGCCa---CCGGCGGAc -3'
miRNA:   3'- agAGUGCGUCG--UGGaccgGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 8639 0.66 0.708383
Target:  5'- gCUCGCGCAgGUACUUGcaGUCCAucaccguguuGCGGAu -3'
miRNA:   3'- aGAGUGCGU-CGUGGAC--CGGGU----------CGCCU- -5'
19734 3' -60.8 NC_004687.1 + 132033 0.66 0.708383
Target:  5'- cCUCGCGCAGCACggUGuGCUCGGgaaccUGGAc -3'
miRNA:   3'- aGAGUGCGUCGUGg-AC-CGGGUC-----GCCU- -5'
19734 3' -60.8 NC_004687.1 + 120802 0.66 0.708383
Target:  5'- uUCUC-CaGCGGCGCC-GGUgCgGGCGGAg -3'
miRNA:   3'- -AGAGuG-CGUCGUGGaCCG-GgUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 135779 0.66 0.708383
Target:  5'- -aUCAUGCGGCcagcGCCgcgaacgggcugUGGgUCAGCGGAg -3'
miRNA:   3'- agAGUGCGUCG----UGG------------ACCgGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 70398 0.66 0.708383
Target:  5'- aUCgUCGCG-GGCACCgGcGCCCAGCcGAu -3'
miRNA:   3'- -AG-AGUGCgUCGUGGaC-CGGGUCGcCU- -5'
19734 3' -60.8 NC_004687.1 + 50727 0.66 0.708383
Target:  5'- gUCUCcaGCGCgGGCACC-GGCCUguucaccgugugGGUGGGc -3'
miRNA:   3'- -AGAG--UGCG-UCGUGGaCCGGG------------UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 87450 0.66 0.707408
Target:  5'- uUCUgGCGCAGCGC--GGCCaugccggaccccuCGGCGGu -3'
miRNA:   3'- -AGAgUGCGUCGUGgaCCGG-------------GUCGCCu -5'
19734 3' -60.8 NC_004687.1 + 147677 0.66 0.705456
Target:  5'- cUCUCGgGCGGCugguagccggacucGCCguccGGCCCucgcGGCGGu -3'
miRNA:   3'- -AGAGUgCGUCG--------------UGGa---CCGGG----UCGCCu -5'
19734 3' -60.8 NC_004687.1 + 25101 0.66 0.698606
Target:  5'- aUC-CACGCcgguGGCcCCUGGUCCAGagaucucuCGGAg -3'
miRNA:   3'- -AGaGUGCG----UCGuGGACCGGGUC--------GCCU- -5'
19734 3' -60.8 NC_004687.1 + 143810 0.66 0.698606
Target:  5'- -aUC-CGguCGGCGCCUGGCCaccaguugGGCGGGa -3'
miRNA:   3'- agAGuGC--GUCGUGGACCGGg-------UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 1266 0.66 0.698606
Target:  5'- gCUCgcagcguaGCGCAGCGCCaccaGGUCCAGgugacccugaCGGAa -3'
miRNA:   3'- aGAG--------UGCGUCGUGGa---CCGGGUC----------GCCU- -5'
19734 3' -60.8 NC_004687.1 + 116107 0.66 0.692713
Target:  5'- uUCUCccagcgggugagccgACGgGGCuccuCCUGGCCUuuGCGGGu -3'
miRNA:   3'- -AGAG---------------UGCgUCGu---GGACCGGGu-CGCCU- -5'
19734 3' -60.8 NC_004687.1 + 75469 0.66 0.688775
Target:  5'- cCUCGucgguggaggcCGgGGCGCCUgGGCCCGcCGGGg -3'
miRNA:   3'- aGAGU-----------GCgUCGUGGA-CCGGGUcGCCU- -5'
19734 3' -60.8 NC_004687.1 + 70701 0.66 0.688775
Target:  5'- aCUCGCaaGGUgauCCgaggcuucucgGGCCCGGCGGAg -3'
miRNA:   3'- aGAGUGcgUCGu--GGa----------CCGGGUCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 47155 0.66 0.682855
Target:  5'- aUCUUGCggaucggccagaacaGCAGCACCgacaucGGCUCcucGGCGGAa -3'
miRNA:   3'- -AGAGUG---------------CGUCGUGGa-----CCGGG---UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 108204 0.66 0.6789
Target:  5'- cUUUCG-GCgAGCGCCUgcgGGCCCuGGUGGAc -3'
miRNA:   3'- -AGAGUgCG-UCGUGGA---CCGGG-UCGCCU- -5'
19734 3' -60.8 NC_004687.1 + 152881 0.66 0.6789
Target:  5'- aCgagCuCGCGGCcuacuuCCUGGCCCGGCa-- -3'
miRNA:   3'- aGa--GuGCGUCGu-----GGACCGGGUCGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.