miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 3' -52.4 NC_004687.1 + 54327 0.78 0.529005
Target:  5'- gCCAACgugaCGcUCGGUGGUGGUGauGUGGCAc -3'
miRNA:   3'- -GGUUGa---GC-AGCCACCACUAC--CACUGU- -5'
19746 3' -52.4 NC_004687.1 + 81645 0.66 0.989526
Target:  5'- gCGGCggCGgCGGUGGUGGaGGcGGCGg -3'
miRNA:   3'- gGUUGa-GCaGCCACCACUaCCaCUGU- -5'
19746 3' -52.4 NC_004687.1 + 119881 0.68 0.94839
Target:  5'- aCCAGCUCGccgccccgggccgcUCGGcuUGGUGGUGGaUGuauCAc -3'
miRNA:   3'- -GGUUGAGC--------------AGCC--ACCACUACC-ACu--GU- -5'
19746 3' -52.4 NC_004687.1 + 136854 0.69 0.930814
Target:  5'- gCAcCUgGUCGGUGGUGcUGGaaGACGa -3'
miRNA:   3'- gGUuGAgCAGCCACCACuACCa-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 79991 0.73 0.781604
Target:  5'- aCCAACgCcUCGGUGGUGAUGuGaUGACc -3'
miRNA:   3'- -GGUUGaGcAGCCACCACUAC-C-ACUGu -5'
19746 3' -52.4 NC_004687.1 + 138538 0.73 0.781604
Target:  5'- cUCAcCUCGcUCGGUGGUcg-GGUGACGg -3'
miRNA:   3'- -GGUuGAGC-AGCCACCAcuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 102654 0.73 0.772187
Target:  5'- aCCGcucCUCGUUGGUGGUGccGGUG-CGg -3'
miRNA:   3'- -GGUu--GAGCAGCCACCACuaCCACuGU- -5'
19746 3' -52.4 NC_004687.1 + 45561 0.76 0.620879
Target:  5'- gCCAGCgacaUCGcCGGUGGUGugGGUGACGu -3'
miRNA:   3'- -GGUUG----AGCaGCCACCACuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 81970 0.77 0.549093
Target:  5'- aCCAACggCGcCGGUGGcggcGGUGGUGGCGg -3'
miRNA:   3'- -GGUUGa-GCaGCCACCa---CUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 139499 0.67 0.973746
Target:  5'- uCCAGggUGUaGGUGGUGcgcagauggGUGGUGGCGa -3'
miRNA:   3'- -GGUUgaGCAgCCACCAC---------UACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 3848 0.67 0.976336
Target:  5'- gCCAugUaaagGUCGGUGGccggGGUGGCu -3'
miRNA:   3'- -GGUugAg---CAGCCACCacuaCCACUGu -5'
19746 3' -52.4 NC_004687.1 + 35596 0.67 0.976336
Target:  5'- --cGCguaGUCGGUcucGUGGUGGUGGCGc -3'
miRNA:   3'- gguUGag-CAGCCAc--CACUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 132247 0.67 0.978734
Target:  5'- uCCuug-UGUgGGUGGUGGUGGUG-Cu -3'
miRNA:   3'- -GGuugaGCAgCCACCACUACCACuGu -5'
19746 3' -52.4 NC_004687.1 + 37931 0.66 0.980302
Target:  5'- aCCGGaugccCUCGUCGGUgagGGUGAacccggcaccggacUGGUuGACGu -3'
miRNA:   3'- -GGUU-----GAGCAGCCA---CCACU--------------ACCA-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 85093 0.66 0.980947
Target:  5'- -aGGCUgGUCGGguc-GGUGGUGACGc -3'
miRNA:   3'- ggUUGAgCAGCCaccaCUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 6740 0.66 0.982984
Target:  5'- gCAcCUCGUCGGUGGUcAUGcggcgcggggcuGUGGCc -3'
miRNA:   3'- gGUuGAGCAGCCACCAcUAC------------CACUGu -5'
19746 3' -52.4 NC_004687.1 + 94248 0.66 0.98375
Target:  5'- uCC-GCUUGUUGGUcagGGUGGccguggcggaguucuUGGUGGCGu -3'
miRNA:   3'- -GGuUGAGCAGCCA---CCACU---------------ACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 104962 0.66 0.984851
Target:  5'- gCCAGgUCGaggCGGUugaGGcgGAUGGUGAUc -3'
miRNA:   3'- -GGUUgAGCa--GCCA---CCa-CUACCACUGu -5'
19746 3' -52.4 NC_004687.1 + 134964 0.66 0.984851
Target:  5'- gCCAGCUCGUCGGgGGUcaGcUGGgcgcccacuaGACGu -3'
miRNA:   3'- -GGUUGAGCAGCCaCCA--CuACCa---------CUGU- -5'
19746 3' -52.4 NC_004687.1 + 139087 1.11 0.005772
Target:  5'- gCCAACUCGUCGGUGGUGAUGGUGACAu -3'
miRNA:   3'- -GGUUGAGCAGCCACCACUACCACUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.