miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 3' -51 NC_004687.1 + 123989 0.67 0.98927
Target:  5'- cCGCG-CGCCc-GUCGGUGUgGGUCAg -3'
miRNA:   3'- -GUGUaGUGGucUAGCUACAgCCAGUg -5'
19748 3' -51 NC_004687.1 + 20000 0.69 0.955926
Target:  5'- uCACAUCGCgcugCGGGaUGGUGUCGGcgUCGCa -3'
miRNA:   3'- -GUGUAGUG----GUCUaGCUACAGCC--AGUG- -5'
19748 3' -51 NC_004687.1 + 9468 0.69 0.951853
Target:  5'- uGCGcCACCAGuccggCG-UGUCGGUCAUc -3'
miRNA:   3'- gUGUaGUGGUCua---GCuACAGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 135292 1.09 0.008878
Target:  5'- cCACAUCACCAGAUCGAUGUCGGUCACc -3'
miRNA:   3'- -GUGUAGUGGUCUAGCUACAGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 17463 0.67 0.982448
Target:  5'- gACAUCG--GGAUCGGggUGUCGGcgUCACg -3'
miRNA:   3'- gUGUAGUggUCUAGCU--ACAGCC--AGUG- -5'
19748 3' -51 NC_004687.1 + 95050 0.66 0.994672
Target:  5'- aUugGUCAUCAGggCGAagugGUCGGcCAg -3'
miRNA:   3'- -GugUAGUGGUCuaGCUa---CAGCCaGUg -5'
19748 3' -51 NC_004687.1 + 35581 0.66 0.993821
Target:  5'- gGCGUCgGCCuGGAUCGcguaGUCGGUCuCg -3'
miRNA:   3'- gUGUAG-UGG-UCUAGCua--CAGCCAGuG- -5'
19748 3' -51 NC_004687.1 + 48921 0.66 0.993821
Target:  5'- uCGCAUCuggagcACCAGAUCGcgcUCGGccUCGCg -3'
miRNA:   3'- -GUGUAG------UGGUCUAGCuacAGCC--AGUG- -5'
19748 3' -51 NC_004687.1 + 144100 0.66 0.99326
Target:  5'- gCGCAUCcggggugccuucgaACCAGAUgacgcuguagggggCGGUGgCGGUCAUg -3'
miRNA:   3'- -GUGUAG--------------UGGUCUA--------------GCUACaGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 2218 0.69 0.963353
Target:  5'- cCGCGUCGCCGuaccCGAgGUCGGUgACg -3'
miRNA:   3'- -GUGUAGUGGUcua-GCUaCAGCCAgUG- -5'
19748 3' -51 NC_004687.1 + 74997 0.68 0.96986
Target:  5'- aACAUCGCCucGAcUCGGg--CGGUCACc -3'
miRNA:   3'- gUGUAGUGGu-CU-AGCUacaGCCAGUG- -5'
19748 3' -51 NC_004687.1 + 66889 0.68 0.972783
Target:  5'- --gGUCACCGuggaGGUGUCGGUCAg -3'
miRNA:   3'- gugUAGUGGUcuagCUACAGCCAGUg -5'
19748 3' -51 NC_004687.1 + 13530 0.67 0.98927
Target:  5'- gGCGUcCACaCGGAUCGuguUGUaccgagUGGUCACg -3'
miRNA:   3'- gUGUA-GUG-GUCUAGCu--ACA------GCCAGUG- -5'
19748 3' -51 NC_004687.1 + 150804 0.68 0.96986
Target:  5'- uCAUAgcUgGCCAGAUCGgcGUC-GUCACg -3'
miRNA:   3'- -GUGU--AgUGGUCUAGCuaCAGcCAGUG- -5'
19748 3' -51 NC_004687.1 + 51224 0.67 0.9878
Target:  5'- cCACggCGgCGG--CGAUGUCGGUCAg -3'
miRNA:   3'- -GUGuaGUgGUCuaGCUACAGCCAGUg -5'
19748 3' -51 NC_004687.1 + 31419 0.68 0.977763
Target:  5'- gCACcUCGCCGGugagcucGUCGAUG-CGGUC-Ca -3'
miRNA:   3'- -GUGuAGUGGUC-------UAGCUACaGCCAGuG- -5'
19748 3' -51 NC_004687.1 + 129319 0.69 0.966719
Target:  5'- uGCGUCGCgGGAaacgCGAUGccgcuggCGGUCAUg -3'
miRNA:   3'- gUGUAGUGgUCUa---GCUACa------GCCAGUG- -5'
19748 3' -51 NC_004687.1 + 84319 0.69 0.951853
Target:  5'- uGC-UCGCCcucGUCGAUGUCGGUgagCACa -3'
miRNA:   3'- gUGuAGUGGuc-UAGCUACAGCCA---GUG- -5'
19748 3' -51 NC_004687.1 + 89882 0.67 0.9878
Target:  5'- gUugAUCACCAGcUCGcccUGUgGGUCGg -3'
miRNA:   3'- -GugUAGUGGUCuAGCu--ACAgCCAGUg -5'
19748 3' -51 NC_004687.1 + 39655 0.67 0.981829
Target:  5'- uCGCG-CGCCGGAaggccgcagcguccUCGgcGUCGGUgGCg -3'
miRNA:   3'- -GUGUaGUGGUCU--------------AGCuaCAGCCAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.