miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19749 3' -56.3 NC_004687.1 + 101989 0.68 0.802021
Target:  5'- -gUCGgUCUUGCG-CaCCGCCauGGUCCg -3'
miRNA:   3'- ugAGCgAGAACGCaGcGGUGG--UCAGG- -5'
19749 3' -56.3 NC_004687.1 + 99276 0.68 0.793077
Target:  5'- uGC-CGUUCU--CGUCGCC-CCAGUCg -3'
miRNA:   3'- -UGaGCGAGAacGCAGCGGuGGUCAGg -5'
19749 3' -56.3 NC_004687.1 + 35175 0.68 0.792174
Target:  5'- gGCUgCGgaagauaCUCUUGCGUC-CCucuuuacccacGCCAGUCCg -3'
miRNA:   3'- -UGA-GC-------GAGAACGCAGcGG-----------UGGUCAGG- -5'
19749 3' -56.3 NC_004687.1 + 85326 0.69 0.783989
Target:  5'- aGCg-GCUCUUcGUGcCGUCGCCGGUCg -3'
miRNA:   3'- -UGagCGAGAA-CGCaGCGGUGGUCAGg -5'
19749 3' -56.3 NC_004687.1 + 72868 0.69 0.774766
Target:  5'- -gUCGCUg-UGUG-CGCCGCCGGuaUCCg -3'
miRNA:   3'- ugAGCGAgaACGCaGCGGUGGUC--AGG- -5'
19749 3' -56.3 NC_004687.1 + 127696 0.69 0.774766
Target:  5'- aGCUCGaUCUgGCGcCGCCAgCcGUCCu -3'
miRNA:   3'- -UGAGCgAGAaCGCaGCGGUgGuCAGG- -5'
19749 3' -56.3 NC_004687.1 + 117150 0.69 0.774766
Target:  5'- aGCgCGCUggagGCGUaggCGCCACCGGUgCCg -3'
miRNA:   3'- -UGaGCGAgaa-CGCA---GCGGUGGUCA-GG- -5'
19749 3' -56.3 NC_004687.1 + 4784 0.69 0.755952
Target:  5'- -gUCGaccagCUUGCGUCcgcugggucugGCCACaCAGUCCu -3'
miRNA:   3'- ugAGCga---GAACGCAG-----------CGGUG-GUCAGG- -5'
19749 3' -56.3 NC_004687.1 + 61987 0.69 0.755952
Target:  5'- gACUCGCUUUacgacgUGC-UCGCCGUCGGUCa -3'
miRNA:   3'- -UGAGCGAGA------ACGcAGCGGUGGUCAGg -5'
19749 3' -56.3 NC_004687.1 + 135103 0.69 0.736705
Target:  5'- -aUCGCUCUUGcCGUCGgCAucCCAGaUCUu -3'
miRNA:   3'- ugAGCGAGAAC-GCAGCgGU--GGUC-AGG- -5'
19749 3' -56.3 NC_004687.1 + 106200 0.7 0.726942
Target:  5'- gACUUGCccgUCUUGCGcuUCaGCCACgAGUCg -3'
miRNA:   3'- -UGAGCG---AGAACGC--AG-CGGUGgUCAGg -5'
19749 3' -56.3 NC_004687.1 + 23564 0.7 0.697205
Target:  5'- gACUCGCggaugaUCUUGCGgCGCCgAUCGG-CCa -3'
miRNA:   3'- -UGAGCG------AGAACGCaGCGG-UGGUCaGG- -5'
19749 3' -56.3 NC_004687.1 + 44196 0.7 0.694201
Target:  5'- ---aGCUCUUGCgGUCGCCGCgAcggcugcccaugauGUCCa -3'
miRNA:   3'- ugagCGAGAACG-CAGCGGUGgU--------------CAGG- -5'
19749 3' -56.3 NC_004687.1 + 116366 0.7 0.687173
Target:  5'- aGCUCGC-CgggGCGUUGCCcggcccggcgacGCCAGgcgCCg -3'
miRNA:   3'- -UGAGCGaGaa-CGCAGCGG------------UGGUCa--GG- -5'
19749 3' -56.3 NC_004687.1 + 66351 0.71 0.65684
Target:  5'- aGCUCGCUgUUgGCGUCGUagUACCGGacgCCc -3'
miRNA:   3'- -UGAGCGAgAA-CGCAGCG--GUGGUCa--GG- -5'
19749 3' -56.3 NC_004687.1 + 33943 0.71 0.65684
Target:  5'- gUUCGCUCUgcaGCuUCGCCGCCAccgCCu -3'
miRNA:   3'- uGAGCGAGAa--CGcAGCGGUGGUca-GG- -5'
19749 3' -56.3 NC_004687.1 + 88779 0.71 0.636507
Target:  5'- gGCUCGgUCUgcaGCGUCcgcuCCACCGGgugCCa -3'
miRNA:   3'- -UGAGCgAGAa--CGCAGc---GGUGGUCa--GG- -5'
19749 3' -56.3 NC_004687.1 + 21611 0.71 0.626331
Target:  5'- uGCUCGUagccggacUCggUGUacuggCGCCACCAGUCCu -3'
miRNA:   3'- -UGAGCG--------AGa-ACGca---GCGGUGGUCAGG- -5'
19749 3' -56.3 NC_004687.1 + 25771 0.72 0.595859
Target:  5'- cCUCGCUCUUGCccccGUCGCUcagGCCGcGcCCg -3'
miRNA:   3'- uGAGCGAGAACG----CAGCGG---UGGU-CaGG- -5'
19749 3' -56.3 NC_004687.1 + 74656 0.74 0.459406
Target:  5'- aGCUCGaaggugGCGUUGCCACCGgcGUCCg -3'
miRNA:   3'- -UGAGCgagaa-CGCAGCGGUGGU--CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.