miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19750 3' -55 NC_004687.1 + 13436 0.65 0.945166
Target:  5'- cCGCCUUGGaggcCCGCagcgcgucCUGAGCAGCg-- -3'
miRNA:   3'- cGCGGAGCU----GGCGa-------GACUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 93375 0.65 0.944719
Target:  5'- uCGCgUCGACCGCcuUCUGGcucccacgucauuGCGACcUGa -3'
miRNA:   3'- cGCGgAGCUGGCG--AGACU-------------CGUUGaAC- -5'
19750 3' -55 NC_004687.1 + 95438 0.66 0.940586
Target:  5'- gGCGCCgUCGGCgCGCUCaucuggucGAGCcGgUUGg -3'
miRNA:   3'- -CGCGG-AGCUG-GCGAGa-------CUCGuUgAAC- -5'
19750 3' -55 NC_004687.1 + 109913 0.66 0.940586
Target:  5'- gGCGCCaaGACCGC-CU--GCGACUg- -3'
miRNA:   3'- -CGCGGagCUGGCGaGAcuCGUUGAac -5'
19750 3' -55 NC_004687.1 + 65450 0.66 0.940586
Target:  5'- aGCGCCUgGGCCGacaUC-GAGCAc---- -3'
miRNA:   3'- -CGCGGAgCUGGCg--AGaCUCGUugaac -5'
19750 3' -55 NC_004687.1 + 144926 0.66 0.935766
Target:  5'- cGCGCCgacgUGGcCCGUgugaUGGGCgAACUUGg -3'
miRNA:   3'- -CGCGGa---GCU-GGCGag--ACUCG-UUGAAC- -5'
19750 3' -55 NC_004687.1 + 27622 0.66 0.930704
Target:  5'- uGCGCCuucaucUCGACCGCguccuugaugCUGGccGCGACg-- -3'
miRNA:   3'- -CGCGG------AGCUGGCGa---------GACU--CGUUGaac -5'
19750 3' -55 NC_004687.1 + 36758 0.66 0.929139
Target:  5'- gGCGuUCUCG-CCGUacuuguucuggacgUCacUGAGCAGCUUGg -3'
miRNA:   3'- -CGC-GGAGCuGGCG--------------AG--ACUCGUUGAAC- -5'
19750 3' -55 NC_004687.1 + 119221 0.66 0.9254
Target:  5'- cCGCCg-GugCGCUC-GGGCAcCUUGg -3'
miRNA:   3'- cGCGGagCugGCGAGaCUCGUuGAAC- -5'
19750 3' -55 NC_004687.1 + 74122 0.66 0.9254
Target:  5'- gGCGCCaCGACgCGCUCaGAGCccaccAGCa-- -3'
miRNA:   3'- -CGCGGaGCUG-GCGAGaCUCG-----UUGaac -5'
19750 3' -55 NC_004687.1 + 37710 0.66 0.9254
Target:  5'- aGCGCCUgGccagcuACCGCaagCaGGGCAACUUc -3'
miRNA:   3'- -CGCGGAgC------UGGCGa--GaCUCGUUGAAc -5'
19750 3' -55 NC_004687.1 + 86596 0.66 0.919854
Target:  5'- -gGCCgaagUGAUCGCgCUGGGCGGCa-- -3'
miRNA:   3'- cgCGGa---GCUGGCGaGACUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 79106 0.66 0.919854
Target:  5'- gGCGCCggGcACCGUggcaccgggUCUGGGCGGCg-- -3'
miRNA:   3'- -CGCGGagC-UGGCG---------AGACUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 155410 0.67 0.914066
Target:  5'- gGCGcCCUgGACCgGCUCgugGAGCAcauccugggGCUg- -3'
miRNA:   3'- -CGC-GGAgCUGG-CGAGa--CUCGU---------UGAac -5'
19750 3' -55 NC_004687.1 + 94210 0.67 0.90742
Target:  5'- gGCGCC-CGGCgCGUUCUGAuCGuggacccGCUUGg -3'
miRNA:   3'- -CGCGGaGCUG-GCGAGACUcGU-------UGAAC- -5'
19750 3' -55 NC_004687.1 + 125517 0.67 0.901769
Target:  5'- gGCGCCgaugCGAucCCGCUC--GGCGACg-- -3'
miRNA:   3'- -CGCGGa---GCU--GGCGAGacUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 116608 0.67 0.895265
Target:  5'- uCGCCcgCGACCGC-CUGGGCcuCg-- -3'
miRNA:   3'- cGCGGa-GCUGGCGaGACUCGuuGaac -5'
19750 3' -55 NC_004687.1 + 5108 0.67 0.894602
Target:  5'- gGCGCCUCGugacgacGCCGaUCUGGcCAGCUa- -3'
miRNA:   3'- -CGCGGAGC-------UGGCgAGACUcGUUGAac -5'
19750 3' -55 NC_004687.1 + 152552 0.67 0.888528
Target:  5'- aUGCCUCG-CCGUUCgcGGGCAAggUGa -3'
miRNA:   3'- cGCGGAGCuGGCGAGa-CUCGUUgaAC- -5'
19750 3' -55 NC_004687.1 + 29646 0.67 0.888528
Target:  5'- gGCGCCUgGAUUGCUCgUGAGaCggUUg- -3'
miRNA:   3'- -CGCGGAgCUGGCGAG-ACUC-GuuGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.