miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19750 3' -55 NC_004687.1 + 134486 1.1 0.003202
Target:  5'- gGCGCCUCGACCGCUCUGAGCAACUUGu -3'
miRNA:   3'- -CGCGGAGCUGGCGAGACUCGUUGAAC- -5'
19750 3' -55 NC_004687.1 + 50841 0.73 0.601678
Target:  5'- gGCGuCCUUGAugccCUGCUCgucGGGCAGCUUGu -3'
miRNA:   3'- -CGC-GGAGCU----GGCGAGa--CUCGUUGAAC- -5'
19750 3' -55 NC_004687.1 + 148543 0.7 0.76239
Target:  5'- uGCGCCUCGGCguacucaUGCUCUcGGcGCAGCg-- -3'
miRNA:   3'- -CGCGGAGCUG-------GCGAGA-CU-CGUUGaac -5'
19750 3' -55 NC_004687.1 + 50272 0.7 0.79144
Target:  5'- aGCGCUUCGuGCCgGUUCUGGccGCAGCUc- -3'
miRNA:   3'- -CGCGGAGC-UGG-CGAGACU--CGUUGAac -5'
19750 3' -55 NC_004687.1 + 92956 0.69 0.809456
Target:  5'- -gGUCUCGAccugcCCGCUCaUGAGCAGgaUGa -3'
miRNA:   3'- cgCGGAGCU-----GGCGAG-ACUCGUUgaAC- -5'
19750 3' -55 NC_004687.1 + 16615 0.69 0.818224
Target:  5'- uUGCCgUCGACCGCcaggCUGAGCGc---- -3'
miRNA:   3'- cGCGG-AGCUGGCGa---GACUCGUugaac -5'
19750 3' -55 NC_004687.1 + 117464 0.69 0.82682
Target:  5'- cGCGuCCUgGGCgGCgUUGAGCGACUc- -3'
miRNA:   3'- -CGC-GGAgCUGgCGaGACUCGUUGAac -5'
19750 3' -55 NC_004687.1 + 51522 0.69 0.82682
Target:  5'- cGCGCCUCGugaCGCUgCUGGaagcuGCAGCg-- -3'
miRNA:   3'- -CGCGGAGCug-GCGA-GACU-----CGUUGaac -5'
19750 3' -55 NC_004687.1 + 117192 0.69 0.833569
Target:  5'- aGCGCCUC-ACCGaugccccaggcCUGcAGCAGCUUGc -3'
miRNA:   3'- -CGCGGAGcUGGCga---------GAC-UCGUUGAAC- -5'
19750 3' -55 NC_004687.1 + 116029 0.69 0.835237
Target:  5'- aCGaCCUCGcGCCGacggaUCUGAGCAACc-- -3'
miRNA:   3'- cGC-GGAGC-UGGCg----AGACUCGUUGaac -5'
19750 3' -55 NC_004687.1 + 124278 0.69 0.835237
Target:  5'- -aGCCUgGGCCaggCUGuGCAGCUUGg -3'
miRNA:   3'- cgCGGAgCUGGcgaGACuCGUUGAAC- -5'
19750 3' -55 NC_004687.1 + 154672 0.69 0.835237
Target:  5'- aGCGCCacucCGGCUGCUC--GGCAGCgUGg -3'
miRNA:   3'- -CGCGGa---GCUGGCGAGacUCGUUGaAC- -5'
19750 3' -55 NC_004687.1 + 120879 0.68 0.843467
Target:  5'- cGCGCCUgCGGCUGC-CgGGGCuGCUg- -3'
miRNA:   3'- -CGCGGA-GCUGGCGaGaCUCGuUGAac -5'
19750 3' -55 NC_004687.1 + 111978 0.68 0.843467
Target:  5'- aGCGCUgcgGGCCGUUCUGcAGCGcgucggcacGCUUGc -3'
miRNA:   3'- -CGCGGag-CUGGCGAGAC-UCGU---------UGAAC- -5'
19750 3' -55 NC_004687.1 + 8425 0.68 0.851502
Target:  5'- aGCGCga-GGCCGCUCUGcAGCAGu--- -3'
miRNA:   3'- -CGCGgagCUGGCGAGAC-UCGUUgaac -5'
19750 3' -55 NC_004687.1 + 28413 0.68 0.851502
Target:  5'- uGCGCCggaGGCCGUUCcGAGCGcgAgUUGc -3'
miRNA:   3'- -CGCGGag-CUGGCGAGaCUCGU--UgAAC- -5'
19750 3' -55 NC_004687.1 + 133491 0.68 0.86696
Target:  5'- cGCGCCcgUCGGCgCGCUCgauGGCu-CUUGg -3'
miRNA:   3'- -CGCGG--AGCUG-GCGAGac-UCGuuGAAC- -5'
19750 3' -55 NC_004687.1 + 2770 0.68 0.86696
Target:  5'- aGCGUCacCGcCUGCUCguUGAGUAGCUUGc -3'
miRNA:   3'- -CGCGGa-GCuGGCGAG--ACUCGUUGAAC- -5'
19750 3' -55 NC_004687.1 + 145353 0.68 0.881561
Target:  5'- cGCgGCCUUugucGCCGCgCUGGGCGGCaUGg -3'
miRNA:   3'- -CG-CGGAGc---UGGCGaGACUCGUUGaAC- -5'
19750 3' -55 NC_004687.1 + 152552 0.67 0.888528
Target:  5'- aUGCCUCG-CCGUUCgcGGGCAAggUGa -3'
miRNA:   3'- cGCGGAGCuGGCGAGa-CUCGUUgaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.