miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20414 3' -59 NC_004688.1 + 14438 0.66 0.727149
Target:  5'- uUCAAGCCUGGGCCcGAagguuaCGGUCGc-- -3'
miRNA:   3'- -AGUUUGGGUCCGGcCUg-----GCCAGCcau -5'
20414 3' -59 NC_004688.1 + 6327 0.66 0.717234
Target:  5'- gCGAuaACCCAGGCCGG---GGUUGGc- -3'
miRNA:   3'- aGUU--UGGGUCCGGCCuggCCAGCCau -5'
20414 3' -59 NC_004688.1 + 89905 0.67 0.666748
Target:  5'- cUCGAACgCGGGUgGGugCGG-CGGc- -3'
miRNA:   3'- -AGUUUGgGUCCGgCCugGCCaGCCau -5'
20414 3' -59 NC_004688.1 + 35632 0.67 0.636047
Target:  5'- aCucACCCAGcCCGGGCCGGU-GGc- -3'
miRNA:   3'- aGuuUGGGUCcGGCCUGGCCAgCCau -5'
20414 3' -59 NC_004688.1 + 33975 0.68 0.595104
Target:  5'- gUCAAAUCCGGGUCaGGgucaggcaGCgGGUCGGg- -3'
miRNA:   3'- -AGUUUGGGUCCGG-CC--------UGgCCAGCCau -5'
20414 3' -59 NC_004688.1 + 76053 0.68 0.574766
Target:  5'- -gAAGCCCGcGGCCcucCCGGUCGGg- -3'
miRNA:   3'- agUUUGGGU-CCGGccuGGCCAGCCau -5'
20414 3' -59 NC_004688.1 + 28364 0.68 0.564655
Target:  5'- ---cGCCagguGGCCGGACUGGgugaCGGUGg -3'
miRNA:   3'- aguuUGGgu--CCGGCCUGGCCa---GCCAU- -5'
20414 3' -59 NC_004688.1 + 28404 0.69 0.524744
Target:  5'- cCAggUCCGGgaaGCCGGGCUGGUCGc-- -3'
miRNA:   3'- aGUuuGGGUC---CGGCCUGGCCAGCcau -5'
20414 3' -59 NC_004688.1 + 5979 0.69 0.514928
Target:  5'- cUCGcGCCCGGGuuGGGCCcGUCGa-- -3'
miRNA:   3'- -AGUuUGGGUCCggCCUGGcCAGCcau -5'
20414 3' -59 NC_004688.1 + 43480 0.69 0.514928
Target:  5'- uUCAGguuGCCCAGGaCGGugCGGgcgCGGc- -3'
miRNA:   3'- -AGUU---UGGGUCCgGCCugGCCa--GCCau -5'
20414 3' -59 NC_004688.1 + 73594 0.69 0.505188
Target:  5'- aUCGAugCgGGGCCGGGCCcG-CGGg- -3'
miRNA:   3'- -AGUUugGgUCCGGCCUGGcCaGCCau -5'
20414 3' -59 NC_004688.1 + 27654 0.71 0.421615
Target:  5'- aUCGAAgCCGaGCCGGAUagCGGUCGGg- -3'
miRNA:   3'- -AGUUUgGGUcCGGCCUG--GCCAGCCau -5'
20414 3' -59 NC_004688.1 + 96875 0.71 0.421615
Target:  5'- -aAAACCCAauuCCGGaguuGCCGGUCGGUGg -3'
miRNA:   3'- agUUUGGGUcc-GGCC----UGGCCAGCCAU- -5'
20414 3' -59 NC_004688.1 + 91703 0.71 0.395652
Target:  5'- cCGGACCCAGGCCGaACCGuuGUCGa-- -3'
miRNA:   3'- aGUUUGGGUCCGGCcUGGC--CAGCcau -5'
20414 3' -59 NC_004688.1 + 6774 0.73 0.33167
Target:  5'- gCAGGCCUGGGCCucuucGGACUGGuUCGGg- -3'
miRNA:   3'- aGUUUGGGUCCGG-----CCUGGCC-AGCCau -5'
20414 3' -59 NC_004688.1 + 6024 1.06 0.001573
Target:  5'- gUCAAACCCAGGCCGGACCGGUCGGUAc -3'
miRNA:   3'- -AGUUUGGGUCCGGCCUGGCCAGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.