miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21052 3' -54.4 NC_004745.1 + 11380 0.66 0.568385
Target:  5'- aG-CGGUGAUGAgCCGGUC-GGCaGCAg -3'
miRNA:   3'- aCgGCCACUAUU-GGCCGGuUCGaUGU- -5'
21052 3' -54.4 NC_004745.1 + 5690 0.66 0.556908
Target:  5'- cGCUGGUGAUGccgcaggggcGCUGGCgCAc-CUGCAa -3'
miRNA:   3'- aCGGCCACUAU----------UGGCCG-GUucGAUGU- -5'
21052 3' -54.4 NC_004745.1 + 18644 0.66 0.545498
Target:  5'- cGCCauGUGAUGAguUCGGUCAGGCU-CAu -3'
miRNA:   3'- aCGGc-CACUAUU--GGCCGGUUCGAuGU- -5'
21052 3' -54.4 NC_004745.1 + 10403 0.67 0.522917
Target:  5'- gGCCGGUGucguuguGCUGGCC-GGUUAa- -3'
miRNA:   3'- aCGGCCACuau----UGGCCGGuUCGAUgu -5'
21052 3' -54.4 NC_004745.1 + 3001 0.67 0.51176
Target:  5'- cGCC-GUGAUGAauacaCGGCaAGGCUACu -3'
miRNA:   3'- aCGGcCACUAUUg----GCCGgUUCGAUGu -5'
21052 3' -54.4 NC_004745.1 + 5099 0.67 0.51176
Target:  5'- gGUCGGUGAUuucuccacACCGGCUAAG--GCGa -3'
miRNA:   3'- aCGGCCACUAu-------UGGCCGGUUCgaUGU- -5'
21052 3' -54.4 NC_004745.1 + 21261 0.69 0.378808
Target:  5'- gGCCGGUGugcuuuaucccgaacUGACCGGCggaAAGCUGa- -3'
miRNA:   3'- aCGGCCACu--------------AUUGGCCGg--UUCGAUgu -5'
21052 3' -54.4 NC_004745.1 + 20959 0.71 0.308022
Target:  5'- aGCCGGUGccGUGACUGGCUGauaagccugauAGcCUGCAu -3'
miRNA:   3'- aCGGCCAC--UAUUGGCCGGU-----------UC-GAUGU- -5'
21052 3' -54.4 NC_004745.1 + 8644 0.73 0.222445
Target:  5'- gUGCCGGU----GCUGGCguGGCUGCGg -3'
miRNA:   3'- -ACGGCCAcuauUGGCCGguUCGAUGU- -5'
21052 3' -54.4 NC_004745.1 + 1733 0.76 0.132482
Target:  5'- cGCCGGUGGUGGCCGGU--GGCa--- -3'
miRNA:   3'- aCGGCCACUAUUGGCCGguUCGaugu -5'
21052 3' -54.4 NC_004745.1 + 20371 1.09 0.00047
Target:  5'- aUGCCGGUGAUAACCGGCCAAGCUACAa -3'
miRNA:   3'- -ACGGCCACUAUUGGCCGGUUCGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.