miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21134 5' -58.4 NC_004775.1 + 23792 0.66 0.459552
Target:  5'- aAUAACAUCaaGCCGUGGCGUUgcuaugaaaAUGGuUGCu -3'
miRNA:   3'- -UAUUGUGG--UGGCACCGCGG---------UGCC-GCG- -5'
21134 5' -58.4 NC_004775.1 + 1579 0.66 0.459552
Target:  5'- --uGCGCUACCu--GCGCCGCGGUa- -3'
miRNA:   3'- uauUGUGGUGGcacCGCGGUGCCGcg -5'
21134 5' -58.4 NC_004775.1 + 13394 0.66 0.420397
Target:  5'- --cGCACCaauaucgacaGCCGUGuGCGCgaugccagUGCGGCGUa -3'
miRNA:   3'- uauUGUGG----------UGGCAC-CGCG--------GUGCCGCG- -5'
21134 5' -58.4 NC_004775.1 + 12446 0.66 0.420397
Target:  5'- gAUGACACUuCCGgaaGGUGCC-CGG-GCu -3'
miRNA:   3'- -UAUUGUGGuGGCa--CCGCGGuGCCgCG- -5'
21134 5' -58.4 NC_004775.1 + 10219 0.67 0.401591
Target:  5'- -cAGCGCUggAUUGUGGCGCC-CaGGCGa -3'
miRNA:   3'- uaUUGUGG--UGGCACCGCGGuG-CCGCg -5'
21134 5' -58.4 NC_004775.1 + 26427 0.68 0.348497
Target:  5'- uAUAACGCCAUUGUcGGCG-CugGGuCGUc -3'
miRNA:   3'- -UAUUGUGGUGGCA-CCGCgGugCC-GCG- -5'
21134 5' -58.4 NC_004775.1 + 14454 0.69 0.30822
Target:  5'- --cACGCCGCCuGUGGCGUauuGCGcCGCu -3'
miRNA:   3'- uauUGUGGUGG-CACCGCGg--UGCcGCG- -5'
21134 5' -58.4 NC_004775.1 + 7066 0.69 0.285085
Target:  5'- uUGAUACCGCgGUGGCcguaauggccugaGCCGCGGagaacaaaGCc -3'
miRNA:   3'- uAUUGUGGUGgCACCG-------------CGGUGCCg-------CG- -5'
21134 5' -58.4 NC_004775.1 + 30022 0.83 0.028818
Target:  5'- gGUGugG-CGCCGUGGCGCCACGGUGg -3'
miRNA:   3'- -UAUugUgGUGGCACCGCGGUGCCGCg -5'
21134 5' -58.4 NC_004775.1 + 30093 1.08 0.000337
Target:  5'- aAUAACACCACCGUGGCGCCACGGCGCc -3'
miRNA:   3'- -UAUUGUGGUGGCACCGCGGUGCCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.