miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21187 5' -50.4 NC_004778.3 + 8146 0.66 0.991163
Target:  5'- uCUGCAGCGgguucaacuaCCAGCAggAGCAAAcggUGUGc -3'
miRNA:   3'- -GACGUUGC----------GGUCGU--UCGUUUaa-GCGC- -5'
21187 5' -50.4 NC_004778.3 + 96410 0.66 0.991163
Target:  5'- -aGU-GCGCCAGCAcgcGGCAAGggUGCu -3'
miRNA:   3'- gaCGuUGCGGUCGU---UCGUUUaaGCGc -5'
21187 5' -50.4 NC_004778.3 + 99225 0.66 0.991163
Target:  5'- aCUGUuguACGgCAGCAAcuGCGucucuUUCGCGa -3'
miRNA:   3'- -GACGu--UGCgGUCGUU--CGUuu---AAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 41896 0.66 0.991163
Target:  5'- -aGCAugGCGCgCGGCGAGCuuuaaggUCGgGg -3'
miRNA:   3'- gaCGU--UGCG-GUCGUUCGuuua---AGCgC- -5'
21187 5' -50.4 NC_004778.3 + 89884 0.66 0.991163
Target:  5'- gUGCAGCGUgGugggcGCAAGCGGcuugCGCGc -3'
miRNA:   3'- gACGUUGCGgU-----CGUUCGUUuaa-GCGC- -5'
21187 5' -50.4 NC_004778.3 + 77138 0.66 0.991163
Target:  5'- -aGCGGCGCUGGaCAAGUu--UUUGCa -3'
miRNA:   3'- gaCGUUGCGGUC-GUUCGuuuAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 86617 0.66 0.991163
Target:  5'- gCUGCGcaacACGUCGGCGcGCuucgGAGUUCgGCGa -3'
miRNA:   3'- -GACGU----UGCGGUCGUuCG----UUUAAG-CGC- -5'
21187 5' -50.4 NC_004778.3 + 44317 0.66 0.991163
Target:  5'- aUGCc-CGCCAGCGacgAGCGGcgcCGCGa -3'
miRNA:   3'- gACGuuGCGGUCGU---UCGUUuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 28438 0.66 0.990786
Target:  5'- gCUGCAGCGCUccuGCAAGggucguucagauuuCAAAgUCGCc -3'
miRNA:   3'- -GACGUUGCGGu--CGUUC--------------GUUUaAGCGc -5'
21187 5' -50.4 NC_004778.3 + 80514 0.66 0.989858
Target:  5'- -cGCAGCucGCUcaGGCugucGUAGAUUCGCGg -3'
miRNA:   3'- gaCGUUG--CGG--UCGuu--CGUUUAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 96597 0.66 0.989858
Target:  5'- cCUGCua-GCCAGCGcGGCGGccgcuagCGCGa -3'
miRNA:   3'- -GACGuugCGGUCGU-UCGUUuaa----GCGC- -5'
21187 5' -50.4 NC_004778.3 + 115193 0.66 0.988406
Target:  5'- gCUGCAgguuGCGCUaaaAGUAcuaAGCGAugcuUUCGCGu -3'
miRNA:   3'- -GACGU----UGCGG---UCGU---UCGUUu---AAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 33660 0.66 0.988406
Target:  5'- -cGCAGCgcgGCCGGCGcGCugccgCGCGg -3'
miRNA:   3'- gaCGUUG---CGGUCGUuCGuuuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 92715 0.66 0.988406
Target:  5'- gUGCGuuuauuaauaugGCGCCGGCGgugcgcgucuuGGCGAg--CGCGg -3'
miRNA:   3'- gACGU------------UGCGGUCGU-----------UCGUUuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 77211 0.66 0.988406
Target:  5'- aUGCGuuuuCGCCGcGCGcAGCGAugUCGCa -3'
miRNA:   3'- gACGUu---GCGGU-CGU-UCGUUuaAGCGc -5'
21187 5' -50.4 NC_004778.3 + 94639 0.66 0.988406
Target:  5'- -cGCGAUGCCGacaacaaCGAGCAGAccgucaccaUUCGCGc -3'
miRNA:   3'- gaCGUUGCGGUc------GUUCGUUU---------AAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 37923 0.66 0.98746
Target:  5'- uUGCGGCGCCaaauauaaaucgAGCGAgcccagcuguccuauGCAAAaUCGCa -3'
miRNA:   3'- gACGUUGCGG------------UCGUU---------------CGUUUaAGCGc -5'
21187 5' -50.4 NC_004778.3 + 119001 0.66 0.986798
Target:  5'- cCU-CAACGCCGcGCAAGUuAAUUgGCa -3'
miRNA:   3'- -GAcGUUGCGGU-CGUUCGuUUAAgCGc -5'
21187 5' -50.4 NC_004778.3 + 38289 0.66 0.986798
Target:  5'- gCUGaucuGCGCCAGCGcGCA----CGCGa -3'
miRNA:   3'- -GACgu--UGCGGUCGUuCGUuuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 10225 0.66 0.986798
Target:  5'- -cGCAAuUGgCGGCGAGCAGGUguuuagugCGCa -3'
miRNA:   3'- gaCGUU-GCgGUCGUUCGUUUAa-------GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.